add mtsv recipe #12452
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add mtsv recipe #12452
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tfursten
commented
Nov 30, 2018
tfursten
commented
- I have read the guidelines for bioconda recipes.
- This PR adds a new recipe.
- AFAIK, this recipe is directly relevant to the biological sciences (otherwise, please submit to the more general purpose conda-forge channel).
- This PR updates an existing recipe.
- This PR does something else (explain below).
|
@bioconda/core - may I have a review for this recipe-thanks |
epruesse
requested changes
Jan 24, 2019
trigger rebuild Update build.sh Update conda_build_config.yaml Update meta.yaml change python pinning
* add adVNTR * fix linux error for adVNTR * add numpy to adVNTR requirements * add numpy include dirs for cythonize * Update advntr to 1.1.0 * Update advntr to 1.1.0 * update advntr to 1.1.1 * update adVNTR to 1.2.0 * update sha256 for adVNTR-1.2.0 * fix build script for adVNTR-1.2.0 * fix adVNTR-1.2.0 * update advntr and its requirements * update advntr -- pysam and htslib versions * skip py37 * force python version to be less than 3.7 * fix noarch problem * exclude python 3.7 * fix a typo * try another approach to exclude py37 * Update meta.yaml
Added hexdump-, sambamba- and samblaster dependencies under run and increased the build number to 4.
…nda#14224) * Update clever-toolkit and distribute a shared library with kmc * skip KMC on OSX, it uses gcc-specific headers
* bump nanopolish recipe to version 0.11.1 * bump nanopolish version to 0.11.1; update build number * remove libgcc @paultsw do you think its possible to remove the gcc execption for OSX already?
ℹ️ Bioconda has finished the [GCC7 migration](bioconda#13578). If you are dealing with C/C++ or Python package it can be that you need to rebuild other dependent packages. [Bioconda utils - update-pinning](https://bioconda.github.io/updating.html#updating-recipes-for-a-pinning-change) will assist you with that. If you have any questions please use [issue 13578](bioconda#13578). ---------------- * [x] I have read the [guidelines for bioconda recipes](https://bioconda.github.io/guidelines.html). * [x] This PR adds a new recipe. * [x] AFAIK, this recipe **is directly relevant to the biological sciences** (otherwise, please submit to the more general purpose [conda-forge channel](https://conda-forge.org/docs/)). * [ ] This PR updates an existing recipe. * [ ] This PR does something else (explain below).
* Add recipe for Augustus 3.3.2
ℹ️ Bioconda has finished the [GCC7 migration](bioconda#13578). If you are dealing with C/C++ or Python package it can be that you need to rebuild other dependent packages. [Bioconda utils - update-pinning](https://bioconda.github.io/updating.html#updating-recipes-for-a-pinning-change) will assist you with that. If you have any questions please use [issue 13578](bioconda#13578). ---------------- * [X] I have read the [guidelines for bioconda recipes](https://bioconda.github.io/guidelines.html). * [] This PR adds a new recipe. * [X] AFAIK, this recipe **is directly relevant to the biological sciences** (otherwise, please submit to the more general purpose [conda-forge channel](https://conda-forge.org/docs/)). * [X] This PR updates an existing recipe. * [ ] This PR does something else (explain below).
add mtsv recipe trigger rebuild Update build.sh Update conda_build_config.yaml Update meta.yaml change python pinning add maintainer fix copy of mtsv-db-build fix binary list pip install pip install remove setuptools rm imports test test setuptools pinning remove mtsv-db test bump build
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