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Updated segemehl 0.2 added segemehl 0.3 (#11753)
* Updated segemehl 0.2 added segemehl 0.3 * Update meta.yaml * skipping osx for now
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#!/bin/bash | ||
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export C_INCLUDE_PATH=${PREFIX}/include:${PREFIX}/include/ncurses | ||
export LIBRARY_PATH=${PREFIX}/lib | ||
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cd segemehl | ||
make segemehl.x -j${CPU_COUNT} | ||
make testrealign.x -j${CPU_COUNT} | ||
make lack.x -j${CPU_COUNT} | ||
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for i in *.x ; do | ||
install ${i} ${PREFIX}/bin | ||
done |
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package: | ||
name: segemehl | ||
version: 0.2.0 | ||
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about: | ||
home: http://www.bioinf.uni-leipzig.de/Software/segemehl/ | ||
summary: Short read mapping with gaps | ||
build: | ||
number: 5 | ||
skip: True # [osx] | ||
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source: | ||
url: "http://www.bioinf.uni-leipzig.de/Software/segemehl/old/segemehl_0_2_0.tar.gz" | ||
sha256: 2575139d2f2ba7bd534afcbe485c0570c177d1faaeb267c4cd873e65b8e72afb | ||
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requirements: | ||
build: | ||
- {{ compiler('c') }} | ||
- {{ compiler('cxx') }} | ||
host: | ||
- zlib | ||
- ncurses | ||
run: | ||
- ncurses | ||
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test: | ||
commands: | ||
- segemehl.x --help 2>&1 | grep -A1 VERSION | ||
- lack.x --help 2>&1 | grep -A1 VERSION | ||
- testrealign.x --help 2>&1 | grep -A1 VERSION | ||
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extra: | ||
identifiers: | ||
- biotools:segemehl | ||
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about: | ||
home: http://www.bioinf.uni-leipzig.de/Software/segemehl/ | ||
license: GPL3 | ||
# license_file: licence.txt | ||
summary: Short read mapping with gaps |
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{% set version = "0.3.1" %} | ||
{% set sha256 = "04b6d92a118b897c8c7d1157c60b2671975cd21da17fe2b7e0200b83f8534c2b" %} | ||
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package: | ||
name: segemehl | ||
version: 0.2.0 | ||
version: {{ version }} | ||
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about: | ||
home: http://www.bioinf.uni-leipzig.de/Software/segemehl/ | ||
summary: Short read mapping with gaps | ||
build: | ||
number: 4 | ||
number: 0 | ||
skip: True # [osx] | ||
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source: | ||
url: "http://www.bioinf.uni-leipzig.de/Software/segemehl/segemehl_0_2_0.tar.gz" | ||
sha256: 2575139d2f2ba7bd534afcbe485c0570c177d1faaeb267c4cd873e65b8e72afb | ||
url: "http://www.bioinf.uni-leipzig.de/Software/segemehl/downloads/segemehl.tar.gz" | ||
sha256: {{ sha256 }} | ||
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requirements: | ||
build: | ||
- {{ compiler('c') }} | ||
- {{ compiler('cxx') }} | ||
- pkg-config | ||
host: | ||
- zlib | ||
- ncurses | ||
- htslib | ||
run: | ||
- zlib | ||
- ncurses | ||
- htslib | ||
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test: | ||
commands: | ||
- segemehl.x --help 2>&1 | grep -A1 VERSION | ||
- lack.x --help 2>&1 | grep -A1 VERSION | ||
- testrealign.x --help 2>&1 | grep -A1 VERSION | ||
- haarz.x --help 2>&1 | grep -A1 VERSION | ||
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extra: | ||
identifiers: | ||
- biotools:segemehl | ||
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about: | ||
home: http://www.bioinf.uni-leipzig.de/Software/segemehl/ | ||
license: GPL3 | ||
license_file: licence.txt | ||
summary: Short read mapping with gaps |