MentaLiST: Remove old versions and pin dependencies in current versio…

…ns (#10720) * Remove old versions and pin julia in current versions * Pin hdf5 * Pin hdf5=1.8.17 * Pin mpfr=3.1.* * Add build.sh for 0.1.9 * Use global pinning for hdf5 * Pin hdf5 again
bioconda · Nov 2, 2018 · 3f459ca · 3f459ca
1 parent 3029cf2
commit 3f459ca
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Showing 11 changed files with 11 additions and 323 deletions.
diff --git a/recipes/mentalist/0.1.3/meta.yaml b/recipes/mentalist/0.1.3/meta.yaml
diff --git a/recipes/mentalist/0.1.4/meta.yaml b/recipes/mentalist/0.1.4/meta.yaml
diff --git a/recipes/mentalist/0.1.5/meta.yaml b/recipes/mentalist/0.1.5/meta.yaml
diff --git a/recipes/mentalist/0.1.6/meta.yaml b/recipes/mentalist/0.1.6/meta.yaml
diff --git a/recipes/mentalist/0.1.7/meta.yaml b/recipes/mentalist/0.1.7/meta.yaml
diff --git a/recipes/mentalist/0.1.8/meta.yaml b/recipes/mentalist/0.1.8/meta.yaml
diff --git a/recipes/mentalist/0.2.2/build.sh → recipes/mentalist/0.1.9/build.sh b/recipes/mentalist/0.2.2/build.sh → recipes/mentalist/0.1.9/build.sh
@@ -1,24 +1,17 @@
 #!/bin/sh
 
-# circumvent a bug in conda-build >=2.1.18,<3.0.10
-# https://github.com/conda/conda-build/issues/2255
-[[ -z $REQUESTS_CA_BUNDLE && ${REQUESTS_CA_BUNDLE+x} ]] && unset REQUESTS_CA_BUNDLE
-[[ -z $SSL_CERT_FILE && ${SSL_CERT_FILE+x} ]] && unset SSL_CERT_FILE
-
 cp -r $SRC_DIR/src/*.jl $PREFIX/bin
 cp -r $SRC_DIR/scripts $PREFIX
 ln -s $PREFIX/bin/MentaLiST.jl $PREFIX/bin/mentalist
 chmod +x $PREFIX/bin/mentalist
 
 julia -e 'Pkg.init()'
+julia -e 'Pkg.add("Suppressor")'
 julia -e 'Pkg.add("ArgParse")'
 julia -e 'Pkg.add("Bio")'
 julia -e 'Pkg.add("OpenGene")'
 julia -e 'Pkg.add("Logging")'
 julia -e 'Pkg.add("Lumberjack")'
-julia -e 'Pkg.add("FastaIO")'
-julia -e 'Pkg.add("JLD")'
-julia -e 'Pkg.add("DataStructures")'
 
 rm -f "$PREFIX"/share/julia/site/lib/v*/*.ji
 rm -rf "$PREFIX"/share/julia/site/v*/METADATA

diff --git a/recipes/mentalist/0.1.9/meta.yaml b/recipes/mentalist/0.1.9/meta.yaml
@@ -10,19 +10,19 @@ source:
   sha256: 44f6718c7d64d952e439fbddba6a413558c95b00de6f3daf0c0807b850914c3e
 
 build:
-  number: 2
+  number: 3
   skip: True  # [osx]
 
 requirements:
   host:
-    - julia
-    - hdf5
-    - mpfr
+    - julia 0.5.2
+    - hdf5 1.8.17
+    - mpfr 3.1.*
     - libxml2
   run:
-    - julia
-    - hdf5
-    - mpfr
+    - julia 0.5.2
+    - hdf5 1.8.17
+    - mpfr 3.1.*
     - libxml2
     - unzip
 

diff --git a/recipes/mentalist/0.2.1/meta.yaml b/recipes/mentalist/0.2.1/meta.yaml
diff --git a/recipes/mentalist/0.2.2/meta.yaml b/recipes/mentalist/0.2.2/meta.yaml
diff --git a/recipes/mentalist/meta.yaml b/recipes/mentalist/meta.yaml
@@ -10,16 +10,16 @@ source:
   sha256: d456615fb9228737aff735d58b272d5bcefd241db6593ece218f2c26c27f165a
 
 build:
-  number: 0
+  number: 1
   skip: True  # [osx]
 
 requirements:
   host:
-    - julia
+    - julia 0.6.1
     - hdf5
     - mpfr
   run:
-    - julia
+    - julia 0.6.1
     - hdf5
     - mpfr
     - libxml2