v1.0.0
PreprocessMD v1.0.0
Closed issues:
- Develop tests on MIMIC IV OMOP data using Downloads.jl (#1)
- Complete biomedical pipeline (#3)
- Add feasibility checks (#5)
- We should accept any
Tables
-compatible table as input, instead of only acceptingDataFrame
s (#24) - Implement machine learning model in example (#42)
- Compatibility issues with MLJ (#45)
- v0.1: Workflows and first function (#48)
- Documentation action fails (#60)
- Clean up and format (#63)
- Don't import entire packages (#64)
- Update all docstrings (#68)
- Change add_label_column!() argument list (#70)
- Add user-centric documentation (#71)
- Add script for local doctests (#74)
- Update test sets (#76)
- Automate documentation with
autodocs
(#83)
Merged pull requests:
- Improve code cov (#7) (@AshlinHarris)
- Use the BlueStyle code style, and automatically format the source code (#9) (@DilumAluthge)
Project.toml
: add a[compat]
entry forjulia
; also,[compat]
entries should not have thev
in them (#10) (@DilumAluthge)- Packages usually should not check the
Manifest.toml
file into source control (#11) (@DilumAluthge) - Run CI on both 1.6 and the latest stable Julia; only run CI on Linux; various other tweaks to the CI workflow file (#12) (@DilumAluthge)
- CI: set
strict = true
when building the documentation (#13) (@DilumAluthge) - 🤖 Automatically format the source code files (#15) (@github-actions[bot])
Project.toml
: further simplify some[compat]
entries (#16) (@DilumAluthge)- Never use
using Foo
; instead, either useimport Foo
, or useusing Foo: f, g, h
(#17) (@DilumAluthge) - The package's
Project.toml
file should only include the dependencies actually used in the source code of the package itself (#18) (@DilumAluthge) - More fixes for the
docs/make.jl
file (#22) (@DilumAluthge) - Remove
test/Manifest.toml
from source control (#23) (@DilumAluthge) - CI: rename
Code Formatting
to justFormatter
(#26) (@DilumAluthge) - 🤖 Automatically format the source code files (#28) (@github-actions[bot])
- Add Aqua.jl to the test suite (#29) (@DilumAluthge)
- Whenever possible, avoid doing
try/catch
in the test suite (#30) (@DilumAluthge) - 🤖 Automatically format the source code files (#32) (@github-actions[bot])
- Update dependencies (#33) (@AshlinHarris)
- Ah development (#35) (@AshlinHarris)
- 🤖 Automatically format the source code files (#36) (@github-actions[bot])
- Download OMOP MIMIC files only once each (#37) (@AshlinHarris)
- Support tables (#40) (@AshlinHarris)
- Clean up tests (#46) (@AshlinHarris)
- Full pipeline (#61) (@AshlinHarris)
- Add ML demonstration to docs (#62) (@AshlinHarris)
- Adjust imports (#65) (@AshlinHarris)
- Update readme (#66) (@AshlinHarris)
- Update README.md (#67) (@AshlinHarris)
- Try doctest (#69) (@AshlinHarris)
- Add jldoctest (#72) (@AshlinHarris)
- Change arguments for add_target_column!() (#73) (@AshlinHarris)
- Local doctests (#75) (@AshlinHarris)
- Update test sets (#77) (@AshlinHarris)
- Update docstrings (#79) (@AshlinHarris)
- Add subsetMD() (#84) (@AshlinHarris)
- Use autodocs (#86) (@AshlinHarris)
- Update
docs/make.jl
(#87) (@AshlinHarris) - Rewrite README.md (#88) (@AshlinHarris)
- CI: disable the Codecov comment (#89) (@DilumAluthge)
- Update version (#90) (@AshlinHarris)
- Update the TagBot workflow file (#91) (@DilumAluthge)
- Update to v1.0.0 (#93) (@AshlinHarris)
- Set up CompatHelper on this repository (#94) (@DilumAluthge)
- Add
.DS_Store
to the.gitignore
file (#95) (@DilumAluthge) - Set 'verbose = false' for all testsets (#96) (@AshlinHarris)
- Format function statements for autodocs (#98) (@AshlinHarris)