aces · driusan · Apr 28, 2021 · Mar 26, 2021 · Mar 26, 2021 · Feb 5, 2021
diff --git a/htdocs/survey.php b/htdocs/survey.php
@@ -54,6 +54,8 @@ class DirectDataEntryMainPage
     var $tpl_data;
     var $caller;
 
+    private $loris;
+
     /**
      * Initialize all of the class variables and things required from the
      * REQUEST.
@@ -78,6 +80,12 @@ function initialize()
         $this->key = $_REQUEST['key'];
 
         $DB = Database::singleton();
+
+        $this->loris     = new \LORIS\LorisInstance(
+            $DB,
+            $config,
+            []
+        );
         $this->TestName  = $DB->pselectOne(
             "SELECT Test_name FROM participant_accounts
             WHERE OneTimePassword=:key AND Status <> 'Complete'",
@@ -346,6 +354,7 @@ function display()
         }
 
         $workspace = $this->caller->load(
+            $this->loris,
             $this->TestName,
             $this->Subtest ?? '',
             $this->CommentID,

diff --git a/modules/api/php/endpoints/candidate/visit/instrument/flags.class.inc b/modules/api/php/endpoints/candidate/visit/instrument/flags.class.inc
@@ -152,7 +152,8 @@ class Flags extends Endpoint implements \LORIS\Middleware\ETagCalculator
             );
         }
 
-        $this->_instrumentStatus = new \NDB_BVL_InstrumentStatus();
+        $loris = $request->getAttribute("loris");
+        $this->_instrumentStatus = new \NDB_BVL_InstrumentStatus($loris);
         $this->_instrumentStatus->select($this->_instrument->commentID);
 
         $data = json_decode((string) $request->getBody(), true);
@@ -213,7 +214,8 @@ class Flags extends Endpoint implements \LORIS\Middleware\ETagCalculator
             );
         }
 
-        $this->_instrumentStatus = new \NDB_BVL_InstrumentStatus();
+        $loris = $request->getAttribute("loris");
+        $this->_instrumentStatus = new \NDB_BVL_InstrumentStatus($loris);
         $this->_instrumentStatus->select($this->_instrument->commentID);
 
         if (!$this->_instrument->determineDataEntryAllowed()) {

diff --git a/modules/api/php/endpoints/candidate/visit/instruments.class.inc b/modules/api/php/endpoints/candidate/visit/instruments.class.inc
@@ -84,6 +84,7 @@ class Instruments extends Endpoint implements \LORIS\Middleware\ETagCalculator
     public function handle(ServerRequestInterface $request) : ResponseInterface
     {
         $pathparts = $request->getAttribute('pathparts');
+        $loris     = $request->getAttribute("loris");
         if (count($pathparts) === 0) {
             switch ($request->getMethod()) {
             case 'GET':
@@ -124,6 +125,7 @@ class Instruments extends Endpoint implements \LORIS\Middleware\ETagCalculator
 
         try {
             $instrument = \NDB_BVL_Instrument::factory(
+                $loris,
                 $instrumentname,
                 $commentid,
                 '',

diff --git a/modules/api/php/endpoints/project/instruments.class.inc b/modules/api/php/endpoints/project/instruments.class.inc
@@ -100,7 +100,9 @@ class Instruments extends Endpoint implements \LORIS\Middleware\ETagCalculator
         // Delegate to instrument specific endpoint.
         $instrumentname = array_shift($pathparts);
         try {
+            $loris      = $request->getAttribute("loris");
             $instrument = \NDB_BVL_Instrument::factory(
+                $loris,
                 $instrumentname,
                 '',
                 '',

diff --git a/modules/candidate_profile/php/module.class.inc b/modules/candidate_profile/php/module.class.inc
@@ -28,7 +28,9 @@ class Module extends \Module
             $candidate = \Candidate::singleton($candID);
 
             $request = $request->withAttribute('candidate', $candidate);
-            $page    = $this->loadPage("candidate_profile");
+            $loris   = $request->getAttribute("loris");
+            $page    = $this->loadPage($loris, "candidate_profile");
+
             return $page->process($request, $page);
         } catch (\DomainException | \LORISException $e) {
             // A LORISException means the \Candidate::singleton couldn't

diff --git a/modules/conflict_resolver/php/conflict_resolver.class.inc b/modules/conflict_resolver/php/conflict_resolver.class.inc
@@ -132,6 +132,7 @@ class Conflict_Resolver extends \NDB_Menu_Filter_Form
                     $TableName = $row['TableName'];
 
                     $Instrument = \NDB_BVL_Instrument::factory(
+                        $this->loris,
                         $TableName,
                         $row['CommentId1'],
                         '',
@@ -154,6 +155,7 @@ class Conflict_Resolver extends \NDB_Menu_Filter_Form
                     }
 
                     $Instrument = \NDB_BVL_Instrument::factory(
+                        $this->loris,
                         $TableName,
                         $row['CommentId2'],
                         '',

diff --git a/modules/dashboard/php/dashboard.class.inc b/modules/dashboard/php/dashboard.class.inc
@@ -46,20 +46,32 @@ class Dashboard extends \NDB_Form
     /**
      * Page constructor for the dashboard main page.
      *
-     * @param \Module $module     The test name being accessed
-     * @param string  $page       The subtest being accessed (may be an empty string)
-     * @param string  $identifier The identifier for the data to load on this page
-     * @param string  $commentID  The CommentID to load the data for
-     * @param string  $formname   The name to give this form
+     * @param \LORIS\LorisInstance $loris      The LORIS instance the page is being
+     *                                         constructed for
+     * @param \Module              $module     The test name being accessed
+     * @param string               $page       The subtest being accessed
+     *                                         (may be an empty string)
+     * @param string               $identifier The identifier for the data to
+     *                                         load on this page
+     * @param string               $commentID  The CommentID to load the data for
+     * @param string               $formname   The name to give this form
      */
     function __construct(
+        \LORIS\LorisInstance $loris,
         \Module $module,
         string $page,
         string $identifier,
         string $commentID,
         string $formname
     ) {
-        parent::__construct($module, $page, $identifier, $commentID, $formname);
+        parent::__construct(
+            $loris,
+            $module,
+            $page,
+            $identifier,
+            $commentID,
+            $formname
+        );
 
         // This needs to be done before setup so that the widget specific CSS and
         // javascript are available for getCSSDependencies and getJSDependencies,

diff --git a/modules/data_release/php/permissions.class.inc b/modules/data_release/php/permissions.class.inc
@@ -59,6 +59,7 @@ class Permissions extends \NDB_Page
         $loris       = $request->getAttribute("loris");
         $DB          = $loris->getDatabaseConnection();
         $releasePage = $this->Module->loadPage(
+            $loris,
             'data_release',
         );
         assert($releasePage instanceof Data_Release);
@@ -206,7 +207,7 @@ class Permissions extends \NDB_Page
         $DB    = $loris->getDatabaseConnection();
 
         // Get current user version files and list of files for each version.
-        $dataRelease = $this->Module->loadPage('data_release');
+        $dataRelease = $this->Module->loadPage($loris, 'data_release');
         assert($dataRelease instanceof Data_Release);
         $userVersionFiles = $dataRelease->getUserVersionFiles($DB);
         $versionFiles     = $dataRelease->getVersionFiles($DB);

diff --git a/modules/dictionary/php/module.class.inc b/modules/dictionary/php/module.class.inc
@@ -126,15 +126,18 @@ class Module extends \Module
      * by the page, so we arbitrarily map "module" URLs to the "moduledict"
      * class name instead.
      *
-     * @param string $page the Page name being accessed.
+     * @param \LORIS\LorisInstance $loris The LORIS instance that the module
+     *                                    is serving.
+     * @param string               $page  The name of the page within the
+     *                                    module to load.
      *
      * @return \NDB_Page
      */
-    public function loadPage(string $page)
+    public function loadPage(\Loris\LORISInstance $loris, string $page)
     {
         if ($page === 'module') {
-            return $this->loadPage('moduledict');
+            return $this->loadPage($loris, 'moduledict');
         }
-        return parent::loadPage($page);
+        return parent::loadPage($loris, $page);
     }
 }
diff --git a/modules/instrument_list/php/instrument_list.class.inc b/modules/instrument_list/php/instrument_list.class.inc
@@ -164,6 +164,7 @@ class Instrument_List extends \NDB_Menu_Filter
     function getControlPanel()
     {
         $controlPanel = new Instrument_List_ControlPanel(
+            $this->loris,
             $this->timePoint->getSessionID()
         );
         // save possible changes from the control panel...
@@ -226,10 +227,10 @@ class Instrument_List extends \NDB_Menu_Filter
                 $prevSubgroup = $instrument['Sub_group'];
 
                 // make an instrument status object
-                $status = new \NDB_BVL_InstrumentStatus;
+                $status = new \NDB_BVL_InstrumentStatus($this->loris);
                 $status->select($instrument['CommentID']);
 
-                $ddeStatus = new \NDB_BVL_InstrumentStatus;
+                $ddeStatus = new \NDB_BVL_InstrumentStatus($this->loris);
                 $ddeStatus->select($instrument['DDECommentID']);
 
                 $Ins = "instruments";

diff --git a/modules/instrument_list/php/instrument_list_controlpanel.class.inc b/modules/instrument_list/php/instrument_list_controlpanel.class.inc
@@ -33,16 +33,27 @@ class Instrument_List_ControlPanel extends \TimePoint
 {
     protected array $tpl_data;
 
+    /**
+     * The LORIS Instance that this timepoint exists on
+     *
+     * @var \LORIS\LorisInstance $loris
+     */
+    protected $loris;
+
     /**
      * Construct function
      *
-     * @param \SessionID $sessionID the value of sessionID
+     * @param \LORIS\LorisInstance $loris     The LORIS Instance.
+     * @param \SessionID           $sessionID SessionID that this control
+     *                                        panel is controlling.
      *
      * @return void
      */
-    function __construct($sessionID)
+    function __construct(\LORIS\LorisInstance $loris, $sessionID)
     {
         $this->tpl_data = [];
+        $this->loris    = $loris;
+
         $this->select($sessionID);
     }
 
@@ -226,6 +237,7 @@ class Instrument_List_ControlPanel extends \TimePoint
                         $instrument['CommentID']
                     );
                     $diff =\ConflictDetector::detectConflictsForCommentIds(
+                        $this->loris,
                         $instrument['Test_name'],
                         $instrument['CommentID'],
                         $instrument['DDECommentID']
@@ -351,7 +363,7 @@ class Instrument_List_ControlPanel extends \TimePoint
         $ddeConflictDetected = false;
         $dataEntry           = '';
         foreach ($batteryList as $instrument) {
-            $status = new \NDB_BVL_InstrumentStatus();
+            $status = new \NDB_BVL_InstrumentStatus($this->loris);
             $status->select($instrument['CommentID']);
             $dataEntry = $status->getDataEntryStatus();
             if ($dataEntry != 'Complete') {
@@ -361,7 +373,7 @@ class Instrument_List_ControlPanel extends \TimePoint
             // If the instrument requires double data entry,
             //check that DDE is also done
             if (in_array($instrument['Test_name'], $ddeInstruments)) {
-                $status = new \NDB_BVL_InstrumentStatus();
+                $status = new \NDB_BVL_InstrumentStatus($this->loris);
                 $status->select($instrument['DDECommentID']);
                 $dataEntry = $status->getDataEntryStatus();
                 if ($dataEntry != 'Complete') {
@@ -567,7 +579,7 @@ class Instrument_List_ControlPanel extends \TimePoint
         $allDataEntryComplete =true;
         foreach ($batteryList as $instrument) {
 
-            $status = new \NDB_BVL_InstrumentStatus();
+            $status = new \NDB_BVL_InstrumentStatus($this->loris);
             $status->select($instrument['CommentID']);
             $dataEntry = $status->getDataEntryStatus();
             if ($dataEntry != 'Complete') {
@@ -578,7 +590,7 @@ class Instrument_List_ControlPanel extends \TimePoint
             // If the instrument requires double data entry,
             // check that DDE is also done
             if (in_array($instrument['Test_name'], $ddeInstruments)) {
-                $status = new \NDB_BVL_InstrumentStatus();
+                $status = new \NDB_BVL_InstrumentStatus($this->loris);
                 $status->select($instrument['DDECommentID']);
                 $dataEntry = $status->getDataEntryStatus();
                 if ($dataEntry != 'Complete') {
@@ -663,7 +675,7 @@ class Instrument_List_ControlPanel extends \TimePoint
         $allDataEntryComplete =true;
         foreach ($batteryList as $instrument) {
 
-            $status = new \NDB_BVL_InstrumentStatus();
+            $status = new \NDB_BVL_InstrumentStatus($this->loris);
             $status->select($instrument['CommentID']);
             $dataEntry = $status->getDataEntryStatus();
             if ($dataEntry != 'Complete') {
@@ -674,7 +686,7 @@ class Instrument_List_ControlPanel extends \TimePoint
             // If the instrument requires double data entry,
             // check that DDE is also done
             if (in_array($instrument['Test_name'], $ddeInstruments)) {
-                $status = new \NDB_BVL_InstrumentStatus();
+                $status = new \NDB_BVL_InstrumentStatus($this->loris);
                 $status->select($instrument['DDECommentID']);
                 $dataEntry = $status->getDataEntryStatus();
                 if ($dataEntry != 'Complete') {

diff --git a/modules/instrument_list/php/module.class.inc b/modules/instrument_list/php/module.class.inc
@@ -61,7 +61,8 @@ class Module extends \Module
         // Falling back to instrument_list, ensure that the CandID
         // and SessionID are valid, and if so attach the models to
         // the request.
-        $page = $this->loadPage("instrument_list");
+        $loris = $request->getAttribute("loris");
+        $page  = $this->loadPage($loris, "instrument_list");
         '@phan-var Instrument_List $page';
 
         $gets = $request->getQueryParams();

diff --git a/modules/instrument_manager/php/instrument_manager.class.inc b/modules/instrument_manager/php/instrument_manager.class.inc
@@ -48,20 +48,30 @@ class Instrument_Manager extends \NDB_Menu_Filter
      * that are common to every type of page. May be overridden by a specific
      * page or specific page type.
      *
-     * @param Module $module    The test name being accessed
-     * @param string $page      The subtest being accessed (may be an empty string)
-     * @param string $id        The identifier for the data to load on this page
-     * @param string $commentID The CommentID to load the data for
-     * @param string $formname  The name to give this form
+     * @param \LORIS\LorisInstance $loris     The LORIS Instance that is serving
+     *                                        the page
+     * @param Module               $module    The test name being accessed
+     * @param string               $page      The subtest being accessed (may be
+     *                                        an empty string)
+     * @param string               $id        The identifier for the data to load
+     *                                        on this page
+     * @param string               $commentID The CommentID to load the data for
+     * @param string               $formname  The name to give this form
      */
-    public function __construct($module, $page, $id, $commentID, $formname)
-    {
+    public function __construct(
+        \LORIS\LorisInstance $loris,
+        $module,
+        $page,
+        $id,
+        $commentID,
+        $formname
+    ) {
         $this->AjaxModule   = true;
         $this->skipTemplate = true;
         $this->_factory     = \NDB_Factory::singleton();
         $this->_path        = $this->_factory->config()->getSetting("base");
 
-        parent::__construct($module, $page, $id, $commentID);
+        parent::__construct($loris, $module, $page, $id, $commentID);
     }
 
     /**
@@ -184,7 +194,12 @@ class Instrument_Manager extends \NDB_Menu_Filter
         // messsage from MySQL. This will be stored in $result and
         // logged via LorisException.
         try {
-            $table_name = \NDB_BVL_Instrument::factory($instrument, '', '')->table;
+            $table_name = \NDB_BVL_Instrument::factory(
+                $this->loris,
+                $instrument,
+                '',
+                '',
+            )->table;
         } catch (\NotFound $e) {
             return (new \LORIS\Http\Response\JSON\NotFound(
                 $e->getMessage()

diff --git a/modules/instruments/php/module.class.inc b/modules/instruments/php/module.class.inc
@@ -74,7 +74,10 @@ class Module extends \Module
                 ->withStatus(400)
                 ->withBody(new \LORIS\Http\StringStream("Missing CommentID"));
         }
+
+        $loris      = $request->getAttribute("loris");
         $instrument = \NDB_BVL_Instrument::factory(
+            $loris,
             $instrumentName,
             $commentID,
             $page
@@ -163,7 +166,7 @@ class Module extends \Module
         $dict = [];
         foreach ($tests as $testname) {
             try {
-                $inst   = \NDB_BVL_Instrument::factory($testname, "", "");
+                $inst   = \NDB_BVL_Instrument::factory($loris, $testname, "", "");
                 $cat    = new \LORIS\Data\Dictionary\Category(
                     $testname,
                     $inst->getFullName()

diff --git a/modules/instruments/php/visitsummary.class.inc b/modules/instruments/php/visitsummary.class.inc
@@ -105,6 +105,7 @@ class VisitSummary extends \NDB_Page
             $commentID = $row['CommentID'];
 
             $instrument = \NDB_BVL_Instrument::factory(
+                $this->loris,
                 $testName,
                 $commentID,
                 '',

diff --git a/modules/next_stage/php/next_stage.class.inc b/modules/next_stage/php/next_stage.class.inc
@@ -118,6 +118,7 @@ class Next_Stage extends \NDB_Form
 
         // add instruments to the time point (lower case stage)
         $battery->createBattery(
+            $this->loris,
             $timePoint->getSubprojectID(),
             $newStage,
             $timePoint->getVisitLabel(),