.travis.yml

notifications: # set notification options
  slack:
    rooms:
      - ucsc-cgl:Edwfgt7MJEVZV9Lib3igueTF
    on_success: change
    on_failure: always
  email: false

language: generic

matrix:
  include:
    - os: linux
      compiler: gcc
      addons:
        apt:
          sources:
            - ubuntu-toolchain-r-test
          packages:
            - cmake-data
            - gcc-5
            - g++-5
            - cmake
      env:
        - MATRIX_EVAL="CC=gcc-5 && CXX=g++-5"
    - os: linux
      compiler: gcc
      addons:
       apt:
         sources:
           - ubuntu-toolchain-r-test
         packages:
           - cmake-data
           - gcc-6
           - g++-6
           - cmake
      env:
        - MATRIX_EVAL="CC=gcc-6 && CXX=g++-6"

    - os: linux
      compiler: clang
      addons:
        apt:
          sources:
            - ubuntu-toolchain-r-test
            - llvm-toolchain-precise-3.6
          packages:
            - clang-3.6
            - cmake
      env:
        - MATRIX_EVAL="CC=clang-3.6 && CXX=clang-3.6"

before_install:
#  - eval "${MATRIX_EVAL}"
  - sudo apt-get update -qq
  - sudo apt-get install build-essential autotools-dev autoconf zlib1g-dev -y
  - sudo apt-get update

install:
  - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
  - bash miniconda.sh -b -p $HOME/miniconda
  - export PATH="$HOME/miniconda/bin:$PATH"
  - conda config --set always_yes yes --set changeps1 no
  - pwd
  - python --version
  - cmake --version
  - gcc --version
  - g++ --version
  - cc --version
  - c++ --version
#  Install boost
  - cd $HOME/build/UCSC-nanopore-cgl/
  - wget -O boost_1_69_0.tar.gz https://sourceforge.net/projects/boost/files/boost/1.69.0/boost_1_69_0.tar.gz/download
  - tar xzf boost_1_69_0.tar.gz >/dev/null
  - cd boost_1_69_0/
  - ./bootstrap.sh --show-libraries
  - ./bootstrap.sh --with-libraries=system,date_time,filesystem,iostreams,coroutine,context >/dev/null #--prefix=/usr/
  - sudo ./b2 && sudo ./b2 install
#  Install HDF5
  - export CFLAGS="$CFLAGS -fPIC"
  - export CXXFLAGS="$CXXFLAGS -fPIC"
  - cd $HOME/build/UCSC-nanopore-cgl/
  - wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.4/src/hdf5-1.10.4.tar.gz
  - tar -xzf hdf5-1.10.4.tar.gz || exit 255
  - cd hdf5-1.10.4 && ./configure --prefix /usr/local --enable-threadsafe --disable-hl && make && sudo make install
#  - echo "LD_LIBRARY_PATH=/home/travis/build/adbailey4/hdf5-1.10.4/hdf5/lib:$LD_LIBRARY_PATH" >> ~/.bashrc
#  - source ~/.bashrc
  - cd /home/travis/build/UCSC-nanopore-cgl/nanopore-toolkit
  - python setup.py install

script:
  - python setup.py test