Merge pull request #67 from SanojPunchihewa/bug-fixes

Stop appending --multi-prefix to minimap2 demo
SanojPunchihewa · Oct 30, 2019 · 8f93c0f · 8f93c0f
2 parents e7f0391 + c8cd95f
commit 8f93c0f
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/app/src/main/java/com/mobilegenomics/f5n/core/Argument.java b/app/src/main/java/com/mobilegenomics/f5n/core/Argument.java
@@ -124,7 +124,7 @@ public String toString() {
                     return this.argValue;
                 }
             } else {
-                return this.flag;
+                return this.flagOnly ? this.flag : "";
             }
         }
         return "";

diff --git a/app/src/main/res/raw/minimap2.json b/app/src/main/res/raw/minimap2.json
@@ -2,7 +2,7 @@
   "args": [
     {
       "argName": "Temporary Prefix for multi-part index",
-      "argValue": "temp.minimap",
+      "argValue": null,
       "argDescription": "Prefix to create temporary files. Typically used for a multi-part index",
       "flag": "--multi-prefix=",
       "argID": "MINIMAP2_TEMP_FILE",