Genopo a.k.a. F5N is a nanopore sequencing analysis toolkit for Android smartphones

Overview

Genopo can run following analysis tools on mobile devices more details

1. minimap2
2. samtools
3. f5c
4. nanopolish
5. bcftools
6. artic_c
7. bioawk

In particular, Genopo has buit in pipelines for

1. Methylation Calling
2. Event Alignment
3. Variant Calling
4. Consensus Building
5. nCoV-2019 novel coronavirus bioinformatics protocol (Artic pipeline)

Real-time sequence analysis (in alpha phase)

Real-time methylation calling on nanopore sequencing batch datasets is experimented. More details can be found at here

Installation

Genopo application can be obtained from:

Google Play

Additionally you can get development builds from Github releases Chose ARCHITECTURE to be armeabi-v7a or arm64-v8a. To find what is the ARCHITECTURE of your phone the easiest way is to google it. Once you download the apk copy it to your phone and install.

VERSION=0.0.4
ARCHITECTURE=armeabi-v7a
wget "https://github.com/SanojPunchihewa/f5n/releases/download/$VERSION/mobilegenomics-f5n-v$VERSION-$ARCHITECTURE-release.apk"

Signature keys of builds are different. Before you switch the installation source, you will have to uninstall the existing Genopo application.

Demo

Configure single/multiple tools	Help

Connecting to F5N server, downloading, running and sending results

Datasets

You can use publicly available datasets

How to contribute

Please contribute to our work by testing,debugging and developing our product. A guide to how to contribute is available here

Submit an issue

Please submit your issues here. Make sure your issue is not an existing one. If a similar issue already exists comment or vote under the existing issue.