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loaded nml_doc used, memory saved #10

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19 changes: 11 additions & 8 deletions opencortex/core/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -874,12 +874,12 @@ def save_network(nml_doc, nml_file_name, validate=True, format='xml', max_memory

##############################################################################################

def generate_lems_simulation(nml_doc,
network,
nml_file_name,
duration,
dt,
def generate_lems_simulation(networkID,
nml_file_name,
duration,
dt,
target_dir='.',
nml_doc=None, # Use this if the nml doc has already been loaded (to avoid delay in reload)
include_extra_lems_files=[],
gen_plots_for_all_v=True,
plot_all_segments=False,
Expand All @@ -894,6 +894,7 @@ def generate_lems_simulation(nml_doc,
gen_spike_saves_for_cells={}, # Dict with file names vs lists of quantity paths
spike_time_format='ID_TIME',
lems_file_name=None,
copy_neuroml=True,
lems_file_generate_seed=12345,
simulation_seed=12345):

Expand All @@ -903,17 +904,18 @@ def generate_lems_simulation(nml_doc,
"""

if not lems_file_name:
lems_file_name = "LEMS_%s.xml" % network.id
lems_file_name = "LEMS_%s.xml" % networkID

include_extra_lems_files.extend(oc_build.all_included_files)

pyneuroml.lems.generate_lems_file_for_neuroml("Sim_%s" % network.id,
pyneuroml.lems.generate_lems_file_for_neuroml("Sim_%s" % networkID,
nml_file_name,
network.id,
networkID,
duration,
dt,
lems_file_name,
target_dir,
nml_doc=nml_doc,
include_extra_files=include_extra_lems_files,
gen_plots_for_all_v=gen_plots_for_all_v,
plot_all_segments=plot_all_segments,
Expand All @@ -927,6 +929,7 @@ def generate_lems_simulation(nml_doc,
gen_spike_saves_for_only_populations=gen_spike_saves_for_only_populations,
gen_spike_saves_for_cells=gen_spike_saves_for_cells,
spike_time_format=spike_time_format,
copy_neuroml=copy_neuroml,
lems_file_generate_seed=lems_file_generate_seed,
simulation_seed=simulation_seed)

Expand Down