superlu: fix build with clang21 by qbisi · Pull Request #448396 · NixOS/nixpkgs

qbisi · 2025-10-04T01:26:57Z

clang21 crashes when compiling slatms.c from SuperLU’s matgen test code
A temporary fix is to disable the vectorize optimization in test target matgen.

cc #444862

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Diff: xiaoyeli/superlu@v7.0.0...v7.0.1 ChangeLog: https://github.com/xiaoyeli/superlu/releases/tag/v7.0.1

qbisi · 2025-10-07T19:21:48Z

`nixpkgs-review` result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 448396
Commit: 7c30eb51bcd2012e4fb12a7fc42c16a39ebdfe29

`aarch64-darwin`

⏩ 1 package marked as broken and skipped:

opentoonz

❌ 18 packages failed to build:

f3d
itk_5_2
mapserver
merkaartor
octavePackages.mapping
openorienteering-mapper
pcl
pflotran
python312Packages.f3d
python312Packages.geoarrow-pandas
python312Packages.geoarrow-pandas.dist
python312Packages.geoarrow-pyarrow
python312Packages.geoarrow-pyarrow.dist
python313Packages.f3d
python313Packages.geoarrow-pandas
python313Packages.geoarrow-pandas.dist
python313Packages.geoarrow-pyarrow
python313Packages.geoarrow-pyarrow.dist

✅ 204 packages built:

ants
apbs
armadillo
dolfinx
elmerfem
froide-govplan
froide-govplan.dist
gdal (python313Packages.gdal)
gdcm
gmt
grass
haskellPackages.hgdal
haskellPackages.hgdal.doc
itk (itk_5)
mapcache
mapnik
mapproxy
mapproxy.dist
octavePackages.dicom
paraview
pdal
perl538Packages.Tirex
perl538Packages.Tirex.devdoc
perlPackages.Tirex (perl540Packages.Tirex)
perlPackages.Tirex.devdoc (perl540Packages.Tirex.devdoc)
petsc
precice
python312Packages.bsuite
python312Packages.bsuite.dist
python312Packages.cartopy
python312Packages.cartopy.dist
python312Packages.django-bootstrap4
python312Packages.django-bootstrap4.dist
python312Packages.django-bootstrap5
python312Packages.django-bootstrap5.dist
python312Packages.drf-extra-fields
python312Packages.drf-extra-fields.dist
python312Packages.fast-simplification
python312Packages.fast-simplification.dist
python312Packages.fenics-dolfinx
python312Packages.fenics-dolfinx.dist
python312Packages.fiona
python312Packages.fiona.dist
python312Packages.firedrake
python312Packages.firedrake.dist
python312Packages.folium
python312Packages.folium.dist
python312Packages.gdal
python312Packages.gdcm
python312Packages.geodatasets
python312Packages.geodatasets.dist
python312Packages.geopandas
python312Packages.geopandas.dist
python312Packages.geoparquet
python312Packages.geoparquet.dist
python312Packages.gstools
python312Packages.gstools.dist
python312Packages.inequality
python312Packages.inequality.dist
python312Packages.libpysal
python312Packages.libpysal.dist
python312Packages.mapclassify
python312Packages.mapclassify.dist
python312Packages.mayavi
python312Packages.mayavi.dist
python312Packages.momepy
python312Packages.momepy.dist
python312Packages.morecantile
python312Packages.morecantile.dist
python312Packages.msticpy
python312Packages.msticpy.dist
python312Packages.netbox-documents
python312Packages.netbox-documents.dist
python312Packages.odc-geo
python312Packages.odc-geo.dist
python312Packages.odc-loader
python312Packages.odc-loader.dist
python312Packages.odc-stac
python312Packages.odc-stac.dist
python312Packages.osmnx
python312Packages.osmnx.dist
python312Packages.pandera
python312Packages.pandera.dist
python312Packages.petsc4py
python312Packages.petsctools
python312Packages.petsctools.dist
python312Packages.plotnine
python312Packages.plotnine.dist
python312Packages.pygmt
python312Packages.pygmt.dist
python312Packages.pykrige
python312Packages.pykrige.dist
python312Packages.pymatgen
python312Packages.pymatgen.dist
python312Packages.pyogrio
python312Packages.pyogrio.dist
python312Packages.pyprecice
python312Packages.pyprecice.dist
python312Packages.python-mapnik
python312Packages.python-mapnik.dist
python312Packages.pyvista
python312Packages.pyvista.dist
python312Packages.rasterio
python312Packages.rasterio.dist
python312Packages.rio-stac
python312Packages.rio-stac.dist
python312Packages.rioxarray
python312Packages.rioxarray.dist
python312Packages.sfepy
python312Packages.sfepy.dist
python312Packages.slepc4py
python312Packages.sumo
python312Packages.sumo.dist
python312Packages.vtk
python312Packages.wktutils
python312Packages.wktutils.dist
python313Packages.bsuite
python313Packages.bsuite.dist
python313Packages.cartopy
python313Packages.cartopy.dist
python313Packages.django-bootstrap4
python313Packages.django-bootstrap4.dist
python313Packages.django-bootstrap5
python313Packages.django-bootstrap5.dist
python313Packages.drf-extra-fields
python313Packages.drf-extra-fields.dist
python313Packages.fast-simplification
python313Packages.fast-simplification.dist
python313Packages.fenics-dolfinx
python313Packages.fenics-dolfinx.dist
python313Packages.fiona
python313Packages.fiona.dist
python313Packages.firedrake
python313Packages.firedrake.dist
python313Packages.folium
python313Packages.folium.dist
python313Packages.gdcm
python313Packages.geodatasets
python313Packages.geodatasets.dist
python313Packages.geopandas
python313Packages.geopandas.dist
python313Packages.geoparquet
python313Packages.geoparquet.dist
python313Packages.gstools
python313Packages.gstools.dist
python313Packages.inequality
python313Packages.inequality.dist
python313Packages.libpysal
python313Packages.libpysal.dist
python313Packages.mapclassify
python313Packages.mapclassify.dist
python313Packages.momepy
python313Packages.momepy.dist
python313Packages.morecantile
python313Packages.morecantile.dist
python313Packages.msticpy
python313Packages.msticpy.dist
python313Packages.netbox-documents
python313Packages.netbox-documents.dist
python313Packages.odc-geo
python313Packages.odc-geo.dist
python313Packages.odc-loader
python313Packages.odc-loader.dist
python313Packages.odc-stac
python313Packages.odc-stac.dist
python313Packages.osmnx
python313Packages.osmnx.dist
python313Packages.pandera
python313Packages.pandera.dist
python313Packages.petsc4py
python313Packages.petsctools
python313Packages.petsctools.dist
python313Packages.plotnine
python313Packages.plotnine.dist
python313Packages.pygmt
python313Packages.pygmt.dist
python313Packages.pykrige
python313Packages.pykrige.dist
python313Packages.pyogrio
python313Packages.pyogrio.dist
python313Packages.pyprecice
python313Packages.pyprecice.dist
python313Packages.python-mapnik
python313Packages.python-mapnik.dist
python313Packages.pyvista
python313Packages.pyvista.dist
python313Packages.rasterio
python313Packages.rasterio.dist
python313Packages.rio-stac
python313Packages.rio-stac.dist
python313Packages.rioxarray
python313Packages.rioxarray.dist
python313Packages.slepc4py
python313Packages.vtk
python313Packages.wktutils
python313Packages.wktutils.dist
saga
slepc
superlu
survex
vtk (vtk_9_5)
vtk-dicom
vtk-full
vtkWithQt6

Error logs: `aarch64-darwin`

itk_5_2

-- Enabled ITKVideoCore, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVideoFiltering, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVideoIO, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVoronoi, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVtkGlue, requested by Module_ITKVtkGlue. -- Enabled ITKWatersheds, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKZLIB, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled SimpleITKFilters, requested by Module_SimpleITKFilters. -- Double correction test returned: 89255.0/1e22 = 8.9255e-18 CMake Error at Modules/ThirdParty/KWSys/src/KWSys/CMakeLists.txt:89 (cmake_minimum_required): Compatibility with CMake < 3.5 has been removed from CMake.

Update the VERSION argument <min> value. Or, use the <min>...<max> syntax
to tell CMake that the project requires at least <min> but has been updated
to work with policies introduced by <max> or earlier.

Or, add -DCMAKE_POLICY_VERSION_MINIMUM=3.5 to try configuring anyway.

-- Configuring incomplete, errors occurred!

mapserver

  File "<string>", line 1, in <lambda>
    import sys; import importlib; list(map(lambda mod: importlib.import_module(mod), sys.argv[1:]))
                                                       ~~~~~~~~~~~~~~~~~~~~~~~^^^^^
  File "/nix/store/xjpv7j44jn7mifw8r69p7shrsh1aqmnf-python3-3.13.7/lib/python3.13/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 1026, in exec_module
  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
  File "/nix/store/bcwkqhly11az9h087kb1l6k6gq0fgadj-mapserver-8.4.1/lib/python3.13/site-packages/mapscript/__init__.py", line 32, in <module>
    from .mapscript import *  # NOQA
    ^^^^^^^^^^^^^^^^^^^^^^^^
  File "/nix/store/bcwkqhly11az9h087kb1l6k6gq0fgadj-mapserver-8.4.1/lib/python3.13/site-packages/mapscript/mapscript.py", line 10, in <module>
    from . import _mapscript
ImportError: dlopen(/nix/store/bcwkqhly11az9h087kb1l6k6gq0fgadj-mapserver-8.4.1/lib/python3.13/site-packages/mapscript/_mapscript.so, 0x0002): Library not loaded: @rpath/libmapserver.2.dylib
  Referenced from: <FA21D7ED-5310-3E19-A480-667675481971> /nix/store/bcwkqhly11az9h087kb1l6k6gq0fgadj-mapserver-8.4.1/lib/python3.13/site-packages/mapscript/_mapscript.so
  Reason: tried: '/usr/local/lib/libmapserver.2.dylib' (no such file), '/usr/lib/libmapserver.2.dylib' (no such file, not in dyld cache)

superlu: remove unused lapack

f2e23a1

qbisi requested a review from emilazy October 4, 2025 01:28

nixpkgs-ci bot added 10.rebuild-linux: 101-500 This PR causes between 101 and 500 packages to rebuild on Linux. 10.rebuild-darwin: 101-500 This PR causes between 101 and 500 packages to rebuild on Darwin. labels Oct 4, 2025

vcunat changed the base branch from staging-next to master October 5, 2025 13:34

nixpkgs-ci bot closed this Oct 5, 2025

nixpkgs-ci bot reopened this Oct 5, 2025

qbisi added 3 commits October 5, 2025 23:58

superlu: use generic blas vendor on all platforms

04e483e

superlu: fix build with clang21

f90df7f

superlu: 7.0.0 -> 7.0.1

7c30eb5

Diff: xiaoyeli/superlu@v7.0.0...v7.0.1 ChangeLog: https://github.com/xiaoyeli/superlu/releases/tag/v7.0.1

qbisi force-pushed the superlu branch from a6b13b3 to 7c30eb5 Compare October 5, 2025 16:22

qbisi mentioned this pull request Oct 5, 2025

petsc: 3.23.7 -> 3.24.0; slepc: 3.23.3 -> 3.24.0 #448943

Merged

13 tasks

NickCao approved these changes Oct 8, 2025

View reviewed changes

NickCao added this pull request to the merge queue Oct 8, 2025

Merged via the queue into NixOS:master with commit c22e935 Oct 8, 2025
29 of 31 checks passed

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superlu: fix build with clang21#448396

superlu: fix build with clang21#448396
NickCao merged 4 commits intoNixOS:masterfrom
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qbisi commented Oct 4, 2025 •

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qbisi commented Oct 7, 2025

nixpkgs-review result

aarch64-darwin

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qbisi commented Oct 4, 2025 •

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`aarch64-darwin`