igraph: 0.10.17 -> 1.0.0 by dotlambda · Pull Request #445482 · NixOS/nixpkgs

dotlambda · 2025-09-23T09:58:03Z

Diff: igraph/igraph@0.10.17...1.0.0

Changelog: https://github.com/igraph/igraph/blob/1.0.0/CHANGELOG.md

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dotlambda · 2025-09-24T10:57:45Z

At least the following packages are broken by this update:

hal-hardware-analyzer incompatible with igraph 1.0.0 emsec/hal#623
cc @risicle @SCOTT-HAMILTON
python3Packages.igraph
python3Packages.leidenalg Update igraph vtraag/leidenalg#209
python312Packages.textnets test_textnet_save_and_load fails with igraph 1.0.0 jboynyc/textnets#66
cc @jboynyc

dotlambda · 2025-10-31T22:25:11Z

`nixpkgs-review` result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 445482
Commit: 950392067f2a7cde61541b171083ceedd3110d2a

`x86_64-linux`

❌ 3 packages failed to build:

hal-hardware-analyzer
python312Packages.textnets
python312Packages.textnets.dist

✅ 50 packages built:

checkov
checkov.dist
flattenReferencesGraph
flattenReferencesGraph.dist
igraph
igraph.dev
igraph.doc
libleidenalg
python312Packages.energyflow
python312Packages.energyflow.dist
python312Packages.explorerscript
python312Packages.explorerscript.dist
python312Packages.igraph
python312Packages.igraph.dist
python312Packages.iplotx
python312Packages.iplotx.dist
python312Packages.kmapper
python312Packages.kmapper.dist
python312Packages.leidenalg
python312Packages.leidenalg.dist
python312Packages.scikit-tda
python312Packages.scikit-tda.dist
python312Packages.skytemple-dtef
python312Packages.skytemple-dtef.dist
python312Packages.skytemple-files
python312Packages.skytemple-files.dist
python312Packages.skytemple-ssb-debugger
python312Packages.skytemple-ssb-debugger.dist
python313Packages.energyflow
python313Packages.energyflow.dist
python313Packages.explorerscript
python313Packages.explorerscript.dist
python313Packages.igraph
python313Packages.igraph.dist
python313Packages.iplotx
python313Packages.iplotx.dist
python313Packages.kmapper
python313Packages.kmapper.dist
python313Packages.leidenalg
python313Packages.leidenalg.dist
python313Packages.scikit-tda
python313Packages.scikit-tda.dist
python313Packages.skytemple-dtef
python313Packages.skytemple-dtef.dist
python313Packages.skytemple-files
python313Packages.skytemple-files.dist
python313Packages.skytemple-ssb-debugger
python313Packages.skytemple-ssb-debugger.dist
skytemple
skytemple.dist

Error logs: `x86_64-linux`

hal-hardware-analyzer

      |                                                                              igraph_vector_int_list_t*
/nix/store/scamh9kpqdnc2hywc804ha7w7ngx31qr-igraph-1.0.0-dev/include/igraph/igraph_paths.h:173:51: note:   initializing argument 2 of 'igraph_error_t igraph_get_all_shortest_paths(const igraph_t*, const igraph_vector_t*, igraph_vector_int_list_t*, igraph_vector_int_list_t*, igraph_vector_int_t*, igraph_int_t, igraph_vs_t, igraph_neimode_t)'
  173 |     const igraph_t *graph, const igraph_vector_t *weights,
      |                            ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/build/source/include/hal_core/utilities/result.h:56:5: error: could not convert '{hal::result_constructor_type::ER(), <expression error>}' from '<brace-enclosed initializer list>' to 'hal::Result<std::vector<std::vector<unsigned int> > >'
   56 |     }
      |     ^
      |     |
      |     <brace-enclosed initializer list>
/build/source/plugins/graph_algorithm/src/algorithms/shortest_path.cpp:271:24: note: in expansion of macro 'ERR'
  271 |                 return ERR(igraph_strerror(res));
      |                        ^~~
[1542/2353] Building CXX object plugins/boolean_influence/CMakeFiles/boolean_influence.dir/src/boolean_influence.cpp.o
[1543/2353] Building CXX object plugins/simulator/netlist_simulator_controller/CMakeFiles/netlist_simulator_controller.dir/src/dummy_engine.cpp.o
[1544/2353] Building CXX object plugins/simulator/netlist_simulator_controller/CMakeFiles/netlist_simulator_controller.dir/src/saleae_directory.cpp.o
[1545/2353] Building CXX object plugins/z3_utils/CMakeFiles/z3_utils.dir/python/python_bindings.cpp.o
[1546/2353] Building CXX object plugins/boolean_influence/CMakeFiles/boolean_influence.dir/python/python_bindings.cpp.o
[1547/2353] Building CXX object plugins/simulator/netlist_simulator_controller/CMakeFiles/netlist_simulator_controller.dir/src/plugin_netlist_simulator_controller.cpp.o
[1548/2353] Building CXX object plugins/simulator/netlist_simulator_controller/CMakeFiles/netlist_simulator_controller.dir/src/netlist_simulator_controller.cpp.o
ninja: build stopped: subcommand failed.

python312Packages.textnets

>       assert net.edges["weight"] == loaded.edges["weight"]
E       assert [0.5440680443...43502757, ...] == [0.5440680443...43502757, ...]
E         
E         At index 1 diff: 0.5440680443502757 != 0.24303804868629442
E         Use -v to get more diff
tests/test_textnets.py:198: AssertionError

=============================== warnings summary ===============================

../../nix/store/k1jsd4b49387g8jda9ypn55vdhd9zdh1-python3.12-spacy-3.8.7/lib/python3.12/site-packages/spacy/cli/_util.py:23

/nix/store/k1jsd4b49387g8jda9ypn55vdhd9zdh1-python3.12-spacy-3.8.7/lib/python3.12/site-packages/spacy/cli/_util.py:23: DeprecationWarning: Importing 'parser.split_arg_string' is deprecated, it will only be available in 'shell_completion' in Click 9.0.

from click.parser import split_arg_string
../../nix/store/12c2mjj6jrbwqm1mypk5mm623scv3nxn-python3.12-weasel-0.4.1/lib/python3.12/site-packages/weasel/util/config.py:8

/nix/store/12c2mjj6jrbwqm1mypk5mm623scv3nxn-python3.12-weasel-0.4.1/lib/python3.12/site-packages/weasel/util/config.py:8: DeprecationWarning: Importing 'parser.split_arg_string' is deprecated, it will only be available in 'shell_completion' in Click 9.0.

from click.parser import split_arg_string
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html

=========================== short test summary info ============================

FAILED tests/test_textnets.py::test_textnet_save_and_load - assert [0.5440680443...43502757, ...] == [0.5440680443...43502757, ...]

================== 1 failed, 30 passed, 2 warnings in 15.77s ===================

risicle · 2025-10-31T23:44:02Z

Given #421201 there's surely nothing we can do but keep an igraph_0_10

Diff: igraph/igraph@0.10.17...1.0.0 Changelog: https://github.com/igraph/igraph/blob/1.0.0/CHANGELOG.md

Diff: vtraag/libleidenalg@0.11.1...0.12.0 Changelog: https://github.com/vtraag/libleidenalg/releases/tag/0.12.0

Diff: igraph/python-igraph@0.11.9...1.0.0 Changelog: https://github.com/igraph/python-igraph/blob/refs/tags/1.0.0/CHANGELOG.md

Diff: vtraag/leidenalg@0.10.2...0.11.0 Changelog: https://github.com/vtraag/leidenalg/blob/0.11.0/CHANGELOG

dotlambda · 2025-11-01T03:25:18Z

`nixpkgs-review` result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 445482
Commit: 6bed30996f004cbec520cd1b4ba32b19351b5f61

`x86_64-linux`

❌ 2 packages failed to build:

python312Packages.textnets
python312Packages.textnets.dist

✅ 50 packages built:

checkov
checkov.dist
flattenReferencesGraph
flattenReferencesGraph.dist
igraph
igraph.dev
igraph.doc
libleidenalg
python312Packages.energyflow
python312Packages.energyflow.dist
python312Packages.explorerscript
python312Packages.explorerscript.dist
python312Packages.igraph
python312Packages.igraph.dist
python312Packages.iplotx
python312Packages.iplotx.dist
python312Packages.kmapper
python312Packages.kmapper.dist
python312Packages.leidenalg
python312Packages.leidenalg.dist
python312Packages.scikit-tda
python312Packages.scikit-tda.dist
python312Packages.skytemple-dtef
python312Packages.skytemple-dtef.dist
python312Packages.skytemple-files
python312Packages.skytemple-files.dist
python312Packages.skytemple-ssb-debugger
python312Packages.skytemple-ssb-debugger.dist
python313Packages.energyflow
python313Packages.energyflow.dist
python313Packages.explorerscript
python313Packages.explorerscript.dist
python313Packages.igraph
python313Packages.igraph.dist
python313Packages.iplotx
python313Packages.iplotx.dist
python313Packages.kmapper
python313Packages.kmapper.dist
python313Packages.leidenalg
python313Packages.leidenalg.dist
python313Packages.scikit-tda
python313Packages.scikit-tda.dist
python313Packages.skytemple-dtef
python313Packages.skytemple-dtef.dist
python313Packages.skytemple-files
python313Packages.skytemple-files.dist
python313Packages.skytemple-ssb-debugger
python313Packages.skytemple-ssb-debugger.dist
skytemple
skytemple.dist

Error logs: `x86_64-linux`

python312Packages.textnets

>       assert net.edges["weight"] == loaded.edges["weight"]
E       assert [0.5440680443...43502757, ...] == [0.5440680443...43502757, ...]
E         
E         At index 1 diff: 0.5440680443502757 != 0.24303804868629442
E         Use -v to get more diff
tests/test_textnets.py:198: AssertionError

=============================== warnings summary ===============================

../../nix/store/k1jsd4b49387g8jda9ypn55vdhd9zdh1-python3.12-spacy-3.8.7/lib/python3.12/site-packages/spacy/cli/_util.py:23

/nix/store/k1jsd4b49387g8jda9ypn55vdhd9zdh1-python3.12-spacy-3.8.7/lib/python3.12/site-packages/spacy/cli/_util.py:23: DeprecationWarning: Importing 'parser.split_arg_string' is deprecated, it will only be available in 'shell_completion' in Click 9.0.

from click.parser import split_arg_string
../../nix/store/12c2mjj6jrbwqm1mypk5mm623scv3nxn-python3.12-weasel-0.4.1/lib/python3.12/site-packages/weasel/util/config.py:8

/nix/store/12c2mjj6jrbwqm1mypk5mm623scv3nxn-python3.12-weasel-0.4.1/lib/python3.12/site-packages/weasel/util/config.py:8: DeprecationWarning: Importing 'parser.split_arg_string' is deprecated, it will only be available in 'shell_completion' in Click 9.0.

from click.parser import split_arg_string
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html

=========================== short test summary info ============================

FAILED tests/test_textnets.py::test_textnet_save_and_load - assert [0.5440680443...43502757, ...] == [0.5440680443...43502757, ...]

=================== 1 failed, 30 passed, 2 warnings in 4.47s ===================

risicle · 2025-11-01T15:27:37Z

Other than the textnets failure, nixpkgs-review happy, macos 12 x86_64, nixos x86_64 & aarch64-linux.

Also built pkgsCross.aarch64-multiplatform variant on nixos x86_64

dotlambda · 2025-11-01T22:42:49Z

`nixpkgs-review` result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 445482
Commit: 384dc3816109ba11708a1bb810a10a0f9c318d66

`x86_64-linux`

✅ 52 packages built:

checkov
checkov.dist
flattenReferencesGraph
flattenReferencesGraph.dist
igraph
igraph.dev
igraph.doc
libleidenalg
python312Packages.energyflow
python312Packages.energyflow.dist
python312Packages.explorerscript
python312Packages.explorerscript.dist
python312Packages.igraph
python312Packages.igraph.dist
python312Packages.iplotx
python312Packages.iplotx.dist
python312Packages.kmapper
python312Packages.kmapper.dist
python312Packages.leidenalg
python312Packages.leidenalg.dist
python312Packages.scikit-tda
python312Packages.scikit-tda.dist
python312Packages.skytemple-dtef
python312Packages.skytemple-dtef.dist
python312Packages.skytemple-files
python312Packages.skytemple-files.dist
python312Packages.skytemple-ssb-debugger
python312Packages.skytemple-ssb-debugger.dist
python312Packages.textnets
python312Packages.textnets.dist
python313Packages.energyflow
python313Packages.energyflow.dist
python313Packages.explorerscript
python313Packages.explorerscript.dist
python313Packages.igraph
python313Packages.igraph.dist
python313Packages.iplotx
python313Packages.iplotx.dist
python313Packages.kmapper
python313Packages.kmapper.dist
python313Packages.leidenalg
python313Packages.leidenalg.dist
python313Packages.scikit-tda
python313Packages.scikit-tda.dist
python313Packages.skytemple-dtef
python313Packages.skytemple-dtef.dist
python313Packages.skytemple-files
python313Packages.skytemple-files.dist
python313Packages.skytemple-ssb-debugger
python313Packages.skytemple-ssb-debugger.dist
skytemple
skytemple.dist

nixpkgs-ci bot added the 6.topic: python Python is a high-level, general-purpose programming language. label Oct 17, 2025

dotlambda force-pushed the igraph branch from 711a968 to 3b627c6 Compare October 23, 2025 15:45

dotlambda force-pushed the igraph branch from 0308a8c to 9503920 Compare October 31, 2025 20:38

dotlambda marked this pull request as ready for review October 31, 2025 20:42

nix-owners bot requested a review from jboynyc October 31, 2025 20:43

nixpkgs-ci bot removed the 11.by: package-maintainer This PR was created by a maintainer of all the package it changes. label Oct 31, 2025

dotlambda added 4 commits October 31, 2025 20:10

igraph: 0.10.17 -> 1.0.0

ee9c2d5

Diff: igraph/igraph@0.10.17...1.0.0 Changelog: https://github.com/igraph/igraph/blob/1.0.0/CHANGELOG.md

libleidenalg: 0.11.1 -> 0.12.0

6226de2

Diff: vtraag/libleidenalg@0.11.1...0.12.0 Changelog: https://github.com/vtraag/libleidenalg/releases/tag/0.12.0

python3Packages.igraph: 0.11.9 -> 1.0.0

7862797

Diff: igraph/python-igraph@0.11.9...1.0.0 Changelog: https://github.com/igraph/python-igraph/blob/refs/tags/1.0.0/CHANGELOG.md

python3Packages.leidenalg: 0.10.2 -> 0.11.0

6f65820

Diff: vtraag/leidenalg@0.10.2...0.11.0 Changelog: https://github.com/vtraag/leidenalg/blob/0.11.0/CHANGELOG

dotlambda force-pushed the igraph branch from 3acaaab to 3e09928 Compare November 1, 2025 03:11

igraph_0: init at 0.10.17

c3ed468

dotlambda force-pushed the igraph branch from 3e09928 to 6bed309 Compare November 1, 2025 03:15

nix-owners bot requested review from SCOTT-HAMILTON and risicle November 1, 2025 03:21

hal-hardware-analyzer: use igraph_0

7c8d018

dotlambda force-pushed the igraph branch from 6bed309 to 7c8d018 Compare November 1, 2025 17:54

python3Packages.textnets: skip test broken by igraph 1.0.0

384dc38

dotlambda added this pull request to the merge queue Nov 1, 2025

Merged via the queue into NixOS:master with commit 68fe45d Nov 1, 2025
28 of 30 checks passed

dotlambda deleted the igraph branch November 1, 2025 23:01

devurandom mentioned this pull request Feb 18, 2026

python3Packages.fints: 4.2.4 -> 5.0.0 #478074

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igraph: 0.10.17 -> 1.0.0#445482

igraph: 0.10.17 -> 1.0.0#445482
dotlambda merged 7 commits intoNixOS:masterfrom
dotlambda:igraph

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