jabref: 5.1 -> 5.2

[r-ryantm]

Automatic update generated by nixpkgs-update tools. This update was made based on information from https://github.com/JabRef/jabref/releases.

meta.description for jabref is: "Open source bibliography reference manager"

meta.homepage for jabref is: "https://www.jabref.org"

meta.changelog for jabref is: ""

Updates performed

• Version update

To inspect upstream changes

• Release on GitHub

• Compare changes on GitHub

Impact

Checks done (click to expand)

---

• built on NixOS

• The tests defined in passthru.tests, if any, passed

• 0 of 0 passed binary check by having a zero exit code.

• 0 of 0 passed binary check by having the new version present in output.

• found 5.2 with grep in /nix/store/i9cw9ilw98pr7ba945aybjs2y9dqb04m-jabref-5.2

• directory tree listing: https://gist.github.com/d9782d3741fb0062dab2e8db5b02440a

• du listing: https://gist.github.com/45b215b0513c8349a47ece603c8b5517

---

Rebuild report (if merged into master) (click to expand)

4 total rebuild path(s)

1 package rebuild(s)

1 x86_64-linux rebuild(s)
1 i686-linux rebuild(s)
1 x86_64-darwin rebuild(s)
1 aarch64-linux rebuild(s)


First fifty rebuilds by attrpath
jabref

Instructions to test this update (click to expand)

---

Either download from Cachix:

nix-store -r /nix/store/i9cw9ilw98pr7ba945aybjs2y9dqb04m-jabref-5.2 \
  --option binary-caches 'https://cache.nixos.org/ https://nix-community.cachix.org/' \
  --option trusted-public-keys '
  nix-community.cachix.org-1:mB9FSh9qf2dCimDSUo8Zy7bkq5CX+/rkCWyvRCYg3Fs=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(The Cachix cache is only trusted for this store-path realization.)
For the Cachix download to work, your user must be in the trusted-users list or you can use sudo since root is effectively trusted.

Or, build yourself:

nix-build -A jabref https://github.com/r-ryantm/nixpkgs/archive/94dc91c49d831df981f5d10c36fdd09cf6b9bc62.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/i9cw9ilw98pr7ba945aybjs2y9dqb04m-jabref-5.2
ls -la /nix/store/i9cw9ilw98pr7ba945aybjs2y9dqb04m-jabref-5.2/bin

---

Pre-merge build results

We have automatically built all packages that will get rebuilt due to
this change.

This gives evidence on whether the upgrade will break dependent packages.
Note sometimes packages show up as failed to build independent of the
change, simply because they are already broken on the target branch.

Result of nixpkgs-review run on x86_64-linux 1

1 package built:

• jabref

---

Maintainer pings

cc @gebner for testing.

[Coda-Coda]

This doesn't work for me, when I use 5.2 I get the following error on running jabref
I am using NixOS 20.09

[...@nixos:~]$ jabref 
#
# A fatal error has been detected by the Java Runtime Environment:
#
#  SIGSEGV (0xb) at pc=0x0000000000000000, pid=20993, tid=20994
#
# JRE version:  (15.0.1+9) (build )
# Java VM: OpenJDK 64-Bit Server VM (15.0.1+9, mixed mode, tiered, compressed oops, g1 gc, linux-amd64)
# Problematic frame:
# C  0x0000000000000000
#
# Core dump will be written. Default location: Core dumps may be processed with "/nix/store/lqv1qn0r19kzc9hhibj8k667049196wr-systemd-246.6/lib/systemd/systemd-coredump %P %u %g %s %t %c %h" (or dumping to /home/.../core.20993)
#
# An error report file with more information is saved as:
# /home/.../hs_err_pid20993.log
#
#
Aborted (core dumped)

[stale]

I marked this as stale due to inactivity. → More info

[zoedsoupe]

trying to update to v5.3 via overlays I get the following error:

Builder called die: Cannot wrap '/nix/store/99drq22rvrxsigzalra0d80kj5f83p17-jabref-5.1/lib/runtime/bin/java' because it is not an executable file
Backtrace:
7 assertExecutable /nix/store/mnrankjvp65m4gr6yq92ghdd5i0mj9lc-hook/nix-support/setup-hook
36 makeWrapper /nix/store/mnrankjvp65m4gr6yq92ghdd5i0mj9lc-hook/nix-support/setup-hook
1330 genericBuild /nix/store/7gdji02y6rbnzv5mcxcf3mwksk785y8j-stdenv-linux/setup
2 main /nix/store/9krlzvny65gdc8s7kpb6lkx8cd02c25b-default-builder.sh