At the moment, if one uses -nogui, only the data files are stored but the figures (which are generated) are just discarded. Ideally, when a user says -nogui the data and the figure files should be saved. This will allow batch processing where I can run pynml-modchananalsyis * on a bunch of files and just let it run. At the moment, the graphs are generated and users have to manually save them to file.