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Merged
pjpegion merged 16 commits into from
Dec 10, 2019
Merged

Psd/develop into master #6

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21d3be4
Update CODEOWNERS for psd/develop branch
climbfuji Jul 9, 2019
5532dc3
Merge branch 'master' into psd/develop
pjpegion Nov 14, 2019
a7010cc
add new lengthscale and timescale fixes, passes RT. need to test in s…
pjpegion Nov 22, 2019
ae0ca5b
add new lengthscale and timescale fixes, passes RT and stand alone test
pjpegion Nov 25, 2019
1ea200f
cleaned up interface of psd/stochy updates, passed RTs
pjpegion Nov 25, 2019
f938910
fix undefined values, and also add standalone testing capability
pjpegion Nov 25, 2019
4d3efc3
Merge pull request #4 from pjpegion/pegion_updates
pjpegion Nov 25, 2019
5ad024b
Merge pull request #1 from noaa-psd/psd/develop
pjpegion Nov 25, 2019
23dc002
fix bug associated with nodes to being defined and fix mpi decomposit…
pjpegion Nov 26, 2019
f97409e
added logic to calculate ntrunc,lon_s and lat_s from lengthscales
pjpegion Dec 3, 2019
a040d66
include Bing Fu addition for dumping random pattern on an interval
pjpegion Dec 6, 2019
3651616
add README for standalone for spectral and ca patterns
pjpegion Dec 6, 2019
243ef47
update README
pjpegion Dec 6, 2019
8b21af2
Merge pull request #2 from pjpegion/decomp_work
pjpegion Dec 6, 2019
8022b01
Merge pull request #3 from pjpegion/master
pjpegion Dec 6, 2019
94c9e13
Merge pull request #5 from pjpegion/psd/develop
pjpegion Dec 6, 2019
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2 changes: 1 addition & 1 deletion CODEOWNERS
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Expand Up @@ -3,7 +3,7 @@

# These owners will be the default owners for everything in the repo.
#* @defunkt
* @pjpegion @climbfuji
* @pjpegion
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# Order is important. The last matching pattern has the most precedence.
# So if a pull request only touches javascript files, only these owners
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33 changes: 33 additions & 0 deletions README.standalone
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Instructions on how to build and run the stand alone ca_global code on hera
1. Copy enitre directory strucure
cd /scratch2/BMC/gsienkf/Philip.Pegion
cp -r NEMSfv3gfs_develop <your path>

2. Optional Compile full model: (I alredy built is, so you should not have to)
cd <your path>/tests/
./compile.sh $PWD/../FV3 hera.intel '32BIT=Y HYDRO=N' 1 NO NO

4. compile standalone model
cd ../stochastic_physics
# my loaded modules:
1) intel/18.0.5.274 3) netcdf/4.7.0 5) contrib 7) anaconda/latest
2) impi/2018.0.4 4) hdf5/1.10.5 6) grads/2.2.1


compile_standalone_ca OR compile_standalone

5. There is an input.nml which is currently set to run at C96, and the INPUT directory points to
C96 grid files. If you want to run at C384, you will need to rm INPUT and link in the C384
directory (ln -sf INPUT_C384 INPUT) and make npx and npy 385 in input.nml

5. get an interactive session

salloc --x11=first -q debug -t 0:30:00 --nodes=1 -A <your account> -n 6

6. run job
srun standalone_ca OR standalone_stochy

7. post-process job to 360x180 grid (script is on hera in ~Philip.Pegion)
run_fregrid.sh (OR run_fregrid_c384.sh)

output file is ca_out.nc
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