parallel netcdf IO#41

Merged

junwang-noaa merged 33 commits into

NOAA-EMC:developfrom

junwang-noaa:netcdf_parallel

Feb 4, 2020

Commits on Jan 8, 2020

netcdf parallel writing and lon/lat in netcdf file
junwang-noaa
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some changes to get it to (almost) run on hera

jswhit2
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jswhit2
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Commits on Jan 9, 2020

lat should be in degrees - remove conversion to radians.

jswhit2
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jswhit2
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import updates from jswhit/fv3atm

jswhit2
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more bug fixes - now works on hera

jswhit2
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specify collective access if compression turned on.

jswhit2
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use classic model

jswhit2
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jswhit2
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Commits on Jan 10, 2020

bug fixes for parallel IO with compression

jswhit2
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jswhit2
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fix calculation of max compression error

jswhit2
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turn off shuffle filter

jswhit2
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code simplification

jswhit2
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jswhit2
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Commits on Jan 17, 2020

remove debug print

jswhit2
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jswhit2
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Commits on Jan 22, 2020

don't use parallel IO for 2d file (since it seems to increase run time)

jswhit2
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jswhit2
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Commits on Jan 23, 2020

allow multiple values of output_file, as long as they all start with 'netcdf'

jswhit2
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jswhit2
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Commits on Jan 24, 2020

use default chunksize for 2d vars

jswhit2
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jswhit2
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delete commented out macro ESMF_ERR_ABORT

jswhit2
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jswhit2
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delete rad2dg

jswhit2
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jswhit2
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Commits on Jan 25, 2020

add module_write_netcdf_parallel.F90

jswhit2
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jswhit2
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add option to build without parallel netcdf (-DNO_PARALLEL_NETCDF)

jswhit2
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jswhit2
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fix typo

jswhit2
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jswhit2
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Commits on Jan 26, 2020

stub file for building without parallel netcdf lib

jswhit2
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jswhit2
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Merge remote-tracking branch 'upstream/develop' into netcdf_parallel

jswhit2
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jswhit2
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allow chunksizes for 2d arrays to be set in model_configure (ichunk2d,jchunk2d)

jswhit2
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jswhit2
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Commits on Jan 27, 2020

add ichunk3d,jchunk3d,kchunk3d to specify 3d chunksizes.

jswhit2
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jswhit2
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fix typo

jswhit2
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jswhit2
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put ifdefs in module_write_netcdf_parallel.F90 so no stub file needed

jswhit2
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jswhit2
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don't need this file anymore

jswhit2
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remove module_write_netcdf_parallel_stub.o target

jswhit2
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use specified chunksizes for serial IO. If chunksize parameter negative, let netcdf library choose defaults.

jswhit2
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update comments

jswhit2
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Commits on Jan 30, 2020

Commits on Feb 1, 2020

fix stub interface in module_write_netcdf_parallel.F90 for cmake build
junwang-noaa
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