Move machine-based options from config.base to host files

ci/cases/pr/C96C48_ufs_hybatmDA.yaml

@@ -21,4 +21,4 @@ skip_ci_on_hosts:
   - gaea
   - orion
   - hercules
-
+  - wcoss2

ci/cases/yamls/ufs_hybatmDA_defaults.ci.yaml

@@ -17,4 +17,3 @@ nsst:
   NST_MODEL: "1"
 sfcanl:
   DONST: "NO"
-

modulefiles/module_gwsetup.wcoss2.lua

@@ -4,5 +4,8 @@ Load environment to run GFS workflow ci scripts on WCOSS2
 
 prepend_path("MODULEPATH", "/apps/ops/test/nco/modulefiles/core")
 load(pathJoin("rocoto","1.3.5"))
+load(pathJoin("PrgEnv-intel"))
+load(pathJoin("intel","19.1.3.304"))
+load(pathJoin("python", "3.8.6"))
 
 whatis("Description: GFS run setup environment")

parm/archive/gfs_downstream.yaml.j2

@@ -6,7 +6,7 @@ gfs_downstream:
         - "{{ COMIN_ATMOS_GEMPAK | relpath(ROTDIR) }}/gfs_{{ cycle_YMDH }}.sfc"
         - "{{ COMIN_ATMOS_GEMPAK | relpath(ROTDIR) }}/gfs_{{ cycle_YMDH }}.snd"
         {% for i in range(1, NUM_SND_COLLECTIVES) %}
-        - "{{ COMIN_ATMOS_WMO | relpath(ROTDIR) }}/gfs_collective{{ i }}.postsnd_{{ cycle_HH }}"
+        - "{{ COMIN_ATMOS_BUFR | relpath(ROTDIR) }}/gfs_collective{{ i }}.fil"
         {% endfor %}
-        - "{{ COMIN_ATMOS_BUFR | relpath(ROTDIR) }}/bufr.t{{ cycle_HH }}z"
+        - "{{ COMIN_ATMOS_BUFR | relpath(ROTDIR) }}/bufr.??????.{{ cycle_YMDH }}"
         - "{{ COMIN_ATMOS_BUFR | relpath(ROTDIR) }}/gfs.t{{ cycle_HH }}z.bufrsnd.tar.gz"

parm/config/gefs/config.base

@@ -210,12 +210,11 @@ case "${APP}" in
     if [[ "${APP}" =~ ^S2SW ]]; then
         export DO_WAVE="YES"
         export WAVE_RUN="both"
-        export cplwav2atm=".true."
     fi
     ;;
   *)
-    echo "Unrecognized APP: ${1}"
-    exit 1
+    echo "FATAL ERROR: Unrecognized APP: '${APP}'"
+    exit 2
     ;;
 esac
 
@@ -327,7 +326,7 @@ export HPSSARCH="@HPSSARCH@"        # save data to HPSS archive
 export LOCALARCH="@LOCALARCH@"        # save data to local archive
 if [[ ${HPSSARCH} = "YES" ]] && [[ ${LOCALARCH} = "YES" ]]; then
    echo "Both HPSS and local archiving selected.  Please choose one or the other."
-   exit 2
+   exit 3
 fi
 export ARCH_CYC=00           # Archive data at this cycle for warm_start capability
 export ARCH_WARMICFREQ=4     # Archive frequency in days for warm_start capability
@@ -338,10 +337,4 @@ export DELETE_COM_IN_ARCHIVE_JOB="YES"   # NO=retain ROTDIR.  YES default in arc
 # Number of regional collectives to create soundings for
 export NUM_SND_COLLECTIVES=${NUM_SND_COLLECTIVES:-9}
 
-# The tracker, genesis, and METplus jobs are not supported on CSPs yet
-# TODO: we should place these in workflow/hosts/[aws|azure|google]pw.yaml as part of CSP's setup, not for general.
-if [[ "${machine}" =~ "PW" ]]; then
-   export DO_WAVE="NO"
-fi
-
 echo "END: config.base"

parm/config/gfs/config.aero

@@ -2,36 +2,8 @@
 
 # UFS-Aerosols settings
 
-# Turn off warnings about unused variables
-# shellcheck disable=SC2034
-
-
 # Path to the input data tree
-case ${machine} in
-  "HERA")
-    AERO_INPUTS_DIR="/scratch1/NCEPDEV/global/glopara/data/gocart_emissions"
-    ;;
-  "ORION" | "HERCULES")
-    AERO_INPUTS_DIR="/work2/noaa/global/wkolczyn/noscrub/global-workflow/gocart_emissions"
-    ;;
-  "S4")
-    AERO_INPUTS_DIR="/data/prod/glopara/gocart_emissions"
-    ;;
-  "WCOSS2")
-    AERO_INPUTS_DIR="/lfs/h2/emc/global/noscrub/emc.global/data/gocart_emissions"
-    ;;
-  "GAEA")
-    AERO_INPUTS_DIR="/gpfs/f5/epic/proj-shared/global/glopara/data/gocart_emissions"
-    ;;
-  "JET")
-    AERO_INPUTS_DIR="/lfs5/HFIP/hfv3gfs/glopara/data/gocart_emissions"
-    ;;
-  *)
-    echo "FATAL ERROR: Machine ${machine} unsupported for aerosols"
-    exit 2
-    ;;
-esac
-export AERO_INPUTS_DIR
+export AERO_INPUTS_DIR=@AERO_INPUTS_DIR@
 
 export AERO_DIAG_TABLE="${PARMgfs}/ufs/fv3/diag_table.aero"
 export AERO_FIELD_TABLE="${PARMgfs}/ufs/fv3/field_table.aero"

parm/config/gfs/config.base

@@ -260,7 +260,7 @@ case "${APP}" in
     ;;
   *)
     echo "Unrecognized APP: '${APP}'"
-    exit 1
+    exit 2
     ;;
 esac
 
@@ -462,7 +462,7 @@ export HPSSARCH="@HPSSARCH@"        # save data to HPSS archive
 export LOCALARCH="@LOCALARCH@"        # save data to local archive
 if [[ ${HPSSARCH} = "YES" ]] && [[ ${LOCALARCH} = "YES" ]]; then
    echo "Both HPSS and local archiving selected.  Please choose one or the other."
-   exit 2
+   exit 3
 fi
 export ARCH_CYC=00           # Archive data at this cycle for warm_start capability
 export ARCH_WARMICFREQ=4     # Archive frequency in days for warm_start capability
@@ -483,20 +483,4 @@ export OFFSET_START_HOUR=0
 # Number of regional collectives to create soundings for
 export NUM_SND_COLLECTIVES=${NUM_SND_COLLECTIVES:-9}
 
-# The tracker, genesis, and METplus jobs are not supported on CSPs yet
-# TODO: we should place these in workflow/hosts/awspw.yaml as part of AWS/AZURE setup, not for general.
-if [[ "${machine}" =~ "PW" ]]; then
-   export DO_TRACKER="NO"
-   export DO_GENESIS="NO"
-   export DO_METP="NO"
-   export DO_WAVE="NO"
-fi
-
-# The tracker and genesis are not installed on Orion/Hercules yet; this requires spack-stack builds of the package.
-# TODO: we should place these in workflow/hosts/[orion|hercules].yaml.
-if [[ "${machine}" == "ORION" || "${machine}" == "HERCULES" ]]; then
-   export DO_TRACKER="NO"
-   export DO_GENESIS="NO"
-fi
-
 echo "END: config.base"

parm/config/gfs/config.prepoceanobs

@@ -14,7 +14,12 @@ export OBS_LIST=@SOCA_OBS_LIST@
 export OBS_YAML=${OBS_LIST}
 
 # ocean analysis needs own dmpdir until standard dmpdir has full ocean obs
-export DMPDIR=@DMPDIR@
+use_exp_obs="@use_exp_obs@"
+if [[ "${use_exp_obs}" == "YES" ]]; then
+    dmpdir_exp="@dmpdir_exp@"
+fi
+
+export DMPDIR="${dmpdir_exp:-${DMPDIR}}"
 
 # For BUFR2IODA json and python scripts
 export JSON_TMPL_DIR="${PARMgfs}/gdas/ioda/bufr2ioda"

parm/config/gfs/yaml/defaults.yaml

@@ -61,4 +61,9 @@ prepoceanobs:
   SOCA_INPUT_FIX_DIR: "${FIXgfs}/gdas/soca/72x35x25/soca"
   SOCA_OBS_LIST: "${PARMgfs}/gdas/soca/obs/obs_list.yaml"  # TODO: This is also repeated in ocnanal
   OBSPREP_YAML: "${PARMgfs}/gdas/soca/obsprep/obsprep_config.yaml"
-  DMPDIR: "${BASE_DATA}/experimental_obs"
+  use_exp_obs: "YES"
+  dmpdir_exp: "${BASE_DATA}/experimental_obs"
+
+# config.aero has just a system-specific path to add.
+# This is handled by the setup_expt.py, but it has to be told to write to it.
+aero: {}

workflow/generate_workflows.sh

@@ -150,10 +150,12 @@ while [[ $# -gt 0 && "$1" != "--" ]]; do
         :)
           echo "[${BASH_SOURCE[0]}]: ${option} requires an argument"
           _usage
+          exit 1
           ;;
         *)
           echo "[${BASH_SOURCE[0]}]: Unrecognized option: ${option}"
           _usage
+          exit 1
           ;;
       esac
    done

workflow/hosts/awspw.yaml

@@ -24,4 +24,8 @@ LOCALARCH: 'NO'
 ATARDIR: '' # TODO: This will not yet work from AWS.
 MAKE_NSSTBUFR: 'NO'
 MAKE_ACFTBUFR: 'NO'
+DO_TRACKER: 'NO'
+DO_GENESIS: 'NO'
+DO_METP: 'NO'
+SUPPORT_WAVES: 'NO'
 SUPPORTED_RESOLUTIONS: ['C48', 'C96'] # TODO: Test and support all cubed-sphere resolutions.

workflow/hosts/azurepw.yaml

@@ -24,4 +24,5 @@ LOCALARCH: 'NO'
 ATARDIR: '' # TODO: This will not yet work from AZURE.
 MAKE_NSSTBUFR: 'NO'
 MAKE_ACFTBUFR: 'NO'
+SUPPORT_WAVES: 'NO'
 SUPPORTED_RESOLUTIONS: ['C48', 'C96'] # TODO: Test and support all cubed-sphere resolutions.

workflow/hosts/gaea.yaml

@@ -26,3 +26,4 @@ ATARDIR: '${NOSCRUB}/archive_rotdir/${PSLOT}'
 MAKE_NSSTBUFR: 'NO'
 MAKE_ACFTBUFR: 'NO'
 SUPPORTED_RESOLUTIONS: ['C1152', 'C768', 'C384', 'C192', 'C96', 'C48']
+AERO_INPUTS_DIR: /gpfs/f5/epic/proj-shared/global/glopara/data/gocart_emissions

workflow/hosts/googlepw.yaml

@@ -24,4 +24,5 @@ LOCALARCH: 'NO'
 ATARDIR: '' # TODO: This will not yet work from GOOGLE.
 MAKE_NSSTBUFR: 'NO'
 MAKE_ACFTBUFR: 'NO'
+SUPPORT_WAVES: 'NO'
 SUPPORTED_RESOLUTIONS: ['C48', 'C96'] # TODO: Test and support all cubed-sphere resolutions.

workflow/hosts/hera.yaml

@@ -28,3 +28,4 @@ SUPPORTED_RESOLUTIONS: ['C1152', 'C768', 'C384', 'C192', 'C96', 'C48']
 COMINecmwf: /scratch1/NCEPDEV/global/glopara/data/external_gempak/ecmwf
 COMINnam: /scratch1/NCEPDEV/global/glopara/data/external_gempak/nam
 COMINukmet: /scratch1/NCEPDEV/global/glopara/data/external_gempak/ukmet
+AERO_INPUTS_DIR: /scratch1/NCEPDEV/global/glopara/data/gocart_emissions

workflow/hosts/hercules.yaml

@@ -24,7 +24,10 @@ LOCALARCH: 'NO'
 ATARDIR: '${NOSCRUB}/archive_rotdir/${PSLOT}'
 MAKE_NSSTBUFR: 'NO'
 MAKE_ACFTBUFR: 'NO'
+DO_TRACKER: 'NO'
+DO_GENESIS: 'NO'
 SUPPORTED_RESOLUTIONS: ['C1152', 'C768', 'C384', 'C192', 'C96', 'C48']
 COMINecmwf: /work/noaa/global/glopara/data/external_gempak/ecmwf
 COMINnam: /work/noaa/global/glopara/data/external_gempak/nam
 COMINukmet: /work/noaa/global/glopara/data/external_gempak/ukmet
+AERO_INPUTS_DIR: /work2/noaa/global/wkolczyn/noscrub/global-workflow/gocart_emissions

workflow/hosts/jet.yaml

@@ -28,3 +28,4 @@ SUPPORTED_RESOLUTIONS: ['C384', 'C192', 'C96', 'C48']
 COMINecmwf: /mnt/lfs5/HFIP/hfv3gfs/glopara/data/external_gempak/ecmwf
 COMINnam: /mnt/lfs5/HFIP/hfv3gfs/glopara/data/external_gempak/nam
 COMINukmet: /mnt/lfs5/HFIP/hfv3gfs/glopara/data/external_gempak/ukmet
+AERO_INPUTS_DIR: /lfs5/HFIP/hfv3gfs/glopara/data/gocart_emissions

workflow/hosts/orion.yaml

@@ -24,7 +24,10 @@ LOCALARCH: 'NO'
 ATARDIR: '${NOSCRUB}/archive_rotdir/${PSLOT}'
 MAKE_NSSTBUFR: 'NO'
 MAKE_ACFTBUFR: 'NO'
+DO_TRACKER: 'NO'
+DO_GENESIS: 'NO'
 SUPPORTED_RESOLUTIONS: ['C1152', 'C768', 'C384', 'C192', 'C96', 'C48']
 COMINecmwf: /work/noaa/global/glopara/data/external_gempak/ecmwf
 COMINnam: /work/noaa/global/glopara/data/external_gempak/nam
 COMINukmet: /work/noaa/global/glopara/data/external_gempak/ukmet
+AERO_INPUTS_DIR: /work2/noaa/global/wkolczyn/noscrub/global-workflow/gocart_emissions

workflow/hosts/s4.yaml

@@ -25,3 +25,4 @@ ATARDIR: '${NOSCRUB}/archive_rotdir/${PSLOT}'
 MAKE_NSSTBUFR: 'YES'
 MAKE_ACFTBUFR: 'YES'
 SUPPORTED_RESOLUTIONS: ['C384', 'C192', 'C96', 'C48']
+AERO_INPUTS_DIR: /data/prod/glopara/gocart_emissions

workflow/hosts/wcoss2.yaml

@@ -28,3 +28,4 @@ SUPPORTED_RESOLUTIONS: ['C1152', 'C768', 'C384', 'C192', 'C96', 'C48']
 COMINecmwf: /lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/ecmwf
 COMINnam: /lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/nam
 COMINukmet: /lfs/h2/emc/global/noscrub/emc.global/data/external_gempak/ukmet
+AERO_INPUTS_DIR: /lfs/h2/emc/global/noscrub/emc.global/data/gocart_emissions