Feature/refactor gfs init

jobs/JGLOBAL_FORECAST_GFS_INITIALIZE

@@ -0,0 +1,62 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.testing.sh"
+source "${HOMEgfs}/ush/jjob_header.sh" -e "fcst" -c "base fcst"
+
+##############################################
+# Set variables used in the script
+##############################################
+# Set wave variables
+if [ ${DO_WAVE:-"NO"} = "YES" ]; then
+  # WAVE component directory
+  export CDUMPwave=${CDUMPwave:-${CDUMP}wave}
+  export COMINwave=${COMINwave:-$(compath.py ${envir}/${NET}/${gfs_ver})/${CDUMP}.${PDY}/${cyc}/wave}
+  export COMOUTwave=${COMOUTwave:-$(compath.py -o ${NET}/${gfs_ver})/${CDUMP}.${PDY}/${cyc}/wave}
+fi
+
+##############################################
+# Begin JOB SPECIFIC work
+##############################################
+
+# Restart conditions for GFS cycle come from GDAS
+rCDUMP=${CDUMP}
+[[ ${CDUMP} = "gfs" ]] && export rCDUMP="gdas"
+
+# Forecast length for GFS forecast
+if [ ${CDUMP} = "gfs" ]; then
+    export FHMAX=${FHMAX_GFS}
+    export FHOUT=${FHOUT_GFS}
+    export FHMAX_HF=${FHMAX_HF_GFS}
+    export FHOUT_HF=${FHOUT_HF_GFS}
+else
+    export FHMAX_HF=0
+    export FHOUT_HF=0
+fi
+
+
+###############################################################
+# Run relevant exglobal script
+$(which python) ${HOMEgfs}/scripts/exglobal_fv3gfs_forecast_initialize.py
+
+exit 9999
+
+
+##############################################
+# End JOB SPECIFIC work
+##############################################
+
+##############################################
+# Final processing
+##############################################
+if [ -e "${pgmout}" ] ; then
+  cat ${pgmout}
+fi
+
+##########################################
+# Remove the Temporary working directory
+##########################################
+cd ${DATAROOT}
+[[ ${KEEPDATA} = "NO" ]] && rm -rf ${DATA}
+
+
+exit 0

jobs/rocoto/fv3gfs_init.sh

@@ -0,0 +1,34 @@
+#! /usr/bin/env bash
+
+# HRW source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source FV3GFS workflow modules
+#. ${HOMEgfs}/ush/load_fv3gfs_modules.sh
+#status=$?
+#[[ ${status} -ne 0 ]] && exit ${status}
+
+# TODO: clean this up
+# HRW source "${HOMEgfs}/ush/detect_machine.sh"
+# HRW set +x
+# HRW source "${HOMEgfs}/ush/module-setup.sh"
+# HRW module use "${HOMEgfs}/sorc/ufs_model.fd/tests"
+# HRW module load modules.ufs_model.lua
+# HRW module load prod_util
+# HRW if [[ "${MACHINE_ID}" = "wcoss2" ]]; then
+# HRW  module load cray-pals
+# HRW fi
+# HRW module list
+# HRW unset MACHINE_ID
+#HRW set_trace
+
+export job="fcst"
+export jobid="${job}.refactor" # HRW
+
+###############################################################
+# Execute the JJOB
+${HOMEgfs}/jobs/JGLOBAL_FORECAST_GFS_INITIALIZE
+status=$?
+
+
+exit ${status}

parm/config/config.fcst

@@ -74,6 +74,7 @@ export FORECASTSH="$HOMEgfs/scripts/exglobal_forecast.sh"
 #export FORECASTSH="$HOMEgfs/scripts/exglobal_forecast.py"  # Temp. while this is worked on
 export FCSTEXECDIR="$HOMEgfs/exec"
 export FCSTEXEC="ufs_model.x"
+export FCSTYAML="$HOMEgfs/parm/ufs/forecast/gfs.yaml"
 
 #######################################################################
 # Model configuration

parm/config/config.gfs_init

@@ -0,0 +1,7 @@
+#!/bin/bash -x
+
+########## config.gfsinit ##########
+# Configuration common to all GFS initialization tasks.
+
+echo "BEGIN: config.gfsinit"
+

parm/ufs/forecast/gfs.yaml

@@ -0,0 +1,21 @@
+forecast:
+
+     dirtree_atmos:
+          mkdir:
+               - $(DATA)/INPUT
+               - $(DATA)/RESTART
+
+     dirtree_ocean:
+          mkdir:
+               - $(DATA)/MOM6_OUTPUT
+               - $(DATA)/history
+               - $(DATA)/INPUT
+               - $(DATA)/RESTART      
+
+     fixed_files:
+          atmos: ${PARMgfs}/ufs/forecast/gfs/fix/atmos.fixed_files.yaml
+          land: ${PARMgfs}/ufs/forecast/gfs/fix/land.fixed_files.yaml
+          ocean: ${PARMgfs}/ufs/forecast/gfs/fix/ocean.fixed_files.yaml
+
+     model_configure: ${PARMufs}/ufs/forecast/gfs/model_configure.IN
+     nems_configure: ${PARMufs}/ufs/forecast/gfs/nems/nems.configure.atm.IN

parm/ufs/forecast/gfs/fix/atmos.fixed_files.yaml

@@ -0,0 +1,87 @@
+copy:
+# Atmosphere mosaic file linked as the grid_spec file (atm only)
+- [$(FIX_orog)/$(atm_res)/$(atm_res)_mosaic.nc, $(DATA)/INPUT/grid_spec.nc]
+
+# Atmosphere grid tile files
+- [$(FIX_orog)/$(atm_res)/$(atm_res)_grid.tile1.nc, $(DATA)/INPUT/]
+- [$(FIX_orog)/$(atm_res)/$(atm_res)_grid.tile2.nc, $(DATA)/INPUT/]
+- [$(FIX_orog)/$(atm_res)/$(atm_res)_grid.tile3.nc, $(DATA)/INPUT/]
+- [$(FIX_orog)/$(atm_res)/$(atm_res)_grid.tile4.nc, $(DATA)/INPUT/]
+- [$(FIX_orog)/$(atm_res)/$(atm_res)_grid.tile5.nc, $(DATA)/INPUT/]
+- [$(FIX_orog)/$(atm_res)/$(atm_res)_grid.tile6.nc, $(DATA)/INPUT/]
+
+
+
+# oro_data_ls and oro_data_ss files from FIX_ugwd
+- [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ls.tile1.nc, $(DATA)/INPUT/oro_data_ls.tile1.nc]
+- [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ls.tile2.nc, $(DATA)/INPUT/oro_data_ls.tile2.nc]
+- [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ls.tile3.nc, $(DATA)/INPUT/oro_data_ls.tile3.nc]
+- [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ls.tile4.nc, $(DATA)/INPUT/oro_data_ls.tile4.nc]
+- [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ls.tile5.nc, $(DATA)/INPUT/oro_data_ls.tile5.nc]
+- [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ls.tile6.nc, $(DATA)/INPUT/oro_data_ls.tile6.nc]
+- [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ss.tile1.nc, $(DATA)/INPUT/oro_data_ss.tile1.nc]
+- [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ss.tile2.nc, $(DATA)/INPUT/oro_data_ss.tile2.nc]
+- [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ss.tile3.nc, $(DATA)/INPUT/oro_data_ss.tile3.nc]
+- [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ss.tile4.nc, $(DATA)/INPUT/oro_data_ss.tile4.nc]
+- [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ss.tile5.nc, $(DATA)/INPUT/oro_data_ss.tile5.nc]
+- [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ss.tile6.nc, $(DATA)/INPUT/oro_data_ss.tile6.nc]
+
+# GWD??
+- [$(FIX_ugwd)/ugwp_limb_tau.nc, $(DATA)/ugwp_limb_tau.nc]
+
+# CO2 climatology
+- [$(FIX_am)/co2monthlycyc.txt,                              $(DATA)/co2monthlycyc.txt]
+- [$(FIX_am)/global_co2historicaldata_glob.txt,              $(DATA)/co2historicaldata_glob.txt]
+- [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2009.txt, $(DATA)/co2historicaldata_2009.txt]
+- [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2010.txt, $(DATA)/co2historicaldata_2010.txt]
+- [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2011.txt, $(DATA)/co2historicaldata_2011.txt]
+- [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2012.txt, $(DATA)/co2historicaldata_2012.txt]
+- [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2013.txt, $(DATA)/co2historicaldata_2013.txt]
+- [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2014.txt, $(DATA)/co2historicaldata_2014.txt]
+- [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2015.txt, $(DATA)/co2historicaldata_2015.txt]
+- [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2016.txt, $(DATA)/co2historicaldata_2016.txt]
+- [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2017.txt, $(DATA)/co2historicaldata_2017.txt]
+- [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2018.txt, $(DATA)/co2historicaldata_2018.txt]
+- [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2019.txt, $(DATA)/co2historicaldata_2019.txt]
+- [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2020.txt, $(DATA)/co2historicaldata_2020.txt]
+- [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2021.txt, $(DATA)/co2historicaldata_2021.txt]
+- [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2022.txt, $(DATA)/co2historicaldata_2022.txt]
+- [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2023.txt, $(DATA)/co2historicaldata_2023.txt]
+
+# FIX_am files
+- [$(FIX_am)/global_climaeropac_global.txt,                 $(DATA)/aerosol.dat]
+- [$(FIX_am)/ozprdlos_2015_new_sbuvO3_tclm15_nuchem.f77,    $(DATA)/global_o3prdlos.f77]
+- [$(FIX_am)/global_h2o_pltc.f77,                           $(DATA)/global_h2oprdlos.f77]
+- [$(FIX_am)/global_glacier.2x2.grb,                        $(DATA)/global_glacier.2x2.grb]
+- [$(FIX_am)/global_maxice.2x2.grb,                         $(DATA)/global_maxice.2x2.grb]
+- [$(FIX_am)/global_snoclim.1.875.grb,                      $(DATA)/global_snoclim.1.875.grb]
+- [$(FIX_am)/global_slmask.t1534.3072.1536.grb,             $(DATA)/global_slmask.t1534.3072.1536.grb]
+- [$(FIX_am)/global_soilmgldas.statsgo.t1534.3072.1536.grb, $(DATA)/global_soilmgldas.statsgo.t1534.3072.1536.grb]
+- [$(FIX_am)/global_solarconstant_noaa_an.txt,              $(DATA)/solarconstant_noaa_an.txt]
+- [$(FIX_am)/global_sfc_emissivity_idx.txt,                 $(DATA)/sfc_emissivity_idx.txt]
+- [$(FIX_am)/RTGSST.1982.2012.monthly.clim.grb,             $(DATA)/RTGSST.1982.2012.monthly.clim.grb]
+- [$(FIX_am)/IMS-NIC.blended.ice.monthly.clim.grb,          $(DATA)/IMS-NIC.blended.ice.monthly.clim.grb]
+
+# MERRA2 Aerosol Climatology
+- [$(FIX_aer)/merra2.aerclim.2003-2014.m01.nc, $(DATA)/aeroclim.m01.nc]
+- [$(FIX_aer)/merra2.aerclim.2003-2014.m02.nc, $(DATA)/aeroclim.m02.nc]
+- [$(FIX_aer)/merra2.aerclim.2003-2014.m03.nc, $(DATA)/aeroclim.m03.nc]
+- [$(FIX_aer)/merra2.aerclim.2003-2014.m04.nc, $(DATA)/aeroclim.m04.nc]
+- [$(FIX_aer)/merra2.aerclim.2003-2014.m05.nc, $(DATA)/aeroclim.m05.nc]
+- [$(FIX_aer)/merra2.aerclim.2003-2014.m06.nc, $(DATA)/aeroclim.m06.nc]
+- [$(FIX_aer)/merra2.aerclim.2003-2014.m07.nc, $(DATA)/aeroclim.m07.nc]
+- [$(FIX_aer)/merra2.aerclim.2003-2014.m08.nc, $(DATA)/aeroclim.m08.nc]
+- [$(FIX_aer)/merra2.aerclim.2003-2014.m09.nc, $(DATA)/aeroclim.m09.nc]
+- [$(FIX_aer)/merra2.aerclim.2003-2014.m10.nc, $(DATA)/aeroclim.m10.nc]
+- [$(FIX_aer)/merra2.aerclim.2003-2014.m11.nc, $(DATA)/aeroclim.m11.nc]
+- [$(FIX_aer)/merra2.aerclim.2003-2014.m12.nc, $(DATA)/aeroclim.m12.nc]
+
+# Optical depth
+- [$(FIX_lut)/optics_BC.v1_3.dat,  $(DATA)/optics_BC.dat]
+- [$(FIX_lut)/optics_DU.v15_3.dat, $(DATA)/optics_DU.dat]
+- [$(FIX_lut)/optics_OC.v1_3.dat,  $(DATA)/optics_OC.dat]
+- [$(FIX_lut)/optics_SS.v3_3.dat,  $(DATA)/optics_SS.dat]
+- [$(FIX_lut)/optics_SU.v1_3.dat,  $(DATA)/optics_SU.dat]
+
+# fd_nems.yaml file
+- [$(HOMEgfs)/sorc/ufs_model.fd/tests/parm/fd_nems.yaml, $(DATA)/]

parm/ufs/forecast/gfs/fix/land.fixed_files.yaml

@@ -0,0 +1,58 @@
+copy:
+
+     # Files from FIX_orog/C??.mx??_frac/fix_sfc
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).facsf.tile1.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).facsf.tile2.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).facsf.tile3.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).facsf.tile4.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).facsf.tile5.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).facsf.tile6.nc, $(DATA)/]
+
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).maximum_snow_albedo.tile1.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).maximum_snow_albedo.tile2.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).maximum_snow_albedo.tile3.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).maximum_snow_albedo.tile4.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).maximum_snow_albedo.tile5.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).maximum_snow_albedo.tile6.nc, $(DATA)/]
+
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).slope_type.tile1.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).slope_type.tile2.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).slope_type.tile3.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).slope_type.tile4.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).slope_type.tile5.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).slope_type.tile6.nc, $(DATA)/]
+
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).snowfree_albedo.tile1.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).snowfree_albedo.tile2.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).snowfree_albedo.tile3.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).snowfree_albedo.tile4.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).snowfree_albedo.tile5.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).snowfree_albedo.tile6.nc, $(DATA)/]
+
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).soil_type.tile1.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).soil_type.tile2.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).soil_type.tile3.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).soil_type.tile4.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).soil_type.tile5.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).soil_type.tile6.nc, $(DATA)/]
+
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).substrate_temperature.tile1.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).substrate_temperature.tile2.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).substrate_temperature.tile3.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).substrate_temperature.tile4.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).substrate_temperature.tile5.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).substrate_temperature.tile6.nc, $(DATA)/]
+
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).vegetation_greenness.tile1.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).vegetation_greenness.tile2.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).vegetation_greenness.tile3.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).vegetation_greenness.tile4.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).vegetation_greenness.tile5.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).vegetation_greenness.tile6.nc, $(DATA)/]
+
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).vegetation_type.tile1.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).vegetation_type.tile2.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).vegetation_type.tile3.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).vegetation_type.tile4.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).vegetation_type.tile5.nc, $(DATA)/]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/fix_sfc/$(atm_res).vegetation_type.tile6.nc, $(DATA)/]

parm/ufs/forecast/gfs/fix/ocean.fixed_files.yaml

@@ -0,0 +1,10 @@
+copy:
+
+     # Orography data tile files
+     # The following are for "frac_grid = .true."
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/oro_$(atm_res).mx$(ocn_res).tile1.nc, $(DATA)/INPUT/oro_data.tile1.nc]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/oro_$(atm_res).mx$(ocn_res).tile2.nc, $(DATA)/INPUT/oro_data.tile2.nc]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/oro_$(atm_res).mx$(ocn_res).tile3.nc, $(DATA)/INPUT/oro_data.tile3.nc]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/oro_$(atm_res).mx$(ocn_res).tile4.nc, $(DATA)/INPUT/oro_data.tile4.nc]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/oro_$(atm_res).mx$(ocn_res).tile5.nc, $(DATA)/INPUT/oro_data.tile5.nc]
+     - [$(FIX_orog)/$(atm_res).mx$(ocn_res)_frac/oro_$(atm_res).mx$(ocn_res).tile6.nc, $(DATA)/INPUT/oro_data.tile6.nc]

parm/ufs/forecast/gfs/model_configure.IN

@@ -0,0 +1,36 @@
+start_year:              {{ ufswm.atmos.timestamps.year }}
+start_month:             {{ ufswm.atmos.timestamps.month }}
+start_day:               {{ ufswm.atmos.timestamps.day }}
+start_hour:              {{ ufswm.atmos.timestamps.hour }}
+start_minute:            {{ ufswm.atmos.timestamps.minute }}
+start_second:            {{ ufswm.atmos.timestamps.second }}
+nhours_fcst              {{ FHMAX }}
+fhrot:                   {{ 0 }}
+
+dt_atmos:                {{ ufswm.atmos.layout.deltim }}
+calendar:                "{{ calendar | default("julian") }}"
+restart_interval:        {{ restart_interval }}
+output_1st_tstep_rst:    {{ output_1st_tstep_rst | default(".false.") }}
+
+quilting:                {{ ufswm.atmos.layout.quilting }}
+write_groups:            {{ ufswm.atmos.layout.write_group }}
+write_tasks_per_group:   {{ ufswm.atmos.layout.wrttask_per_group }}
+itasks:                  1
+output_history:          {{ OUTPUT_HISTORY | default(".true.") }}
+write_dopost:            {{ WRITE_DOPOST }}
+write_nsflip:            {{ WRITE_NSFLIP }}
+num_files:               {{ numfiles | default(2) }} 
+filename_base:           "{{ filename_base_atm | default("atm") }}" "{{ filename_base_sfc | default("sfc") }}"
+output_grid:             {{ OUTPUT_GRID | default("gaussian_grid") }}
+output_file:             "{{ OUTPUT_FILETYPE_ATM | default("netcdf") }}" "{{ OUTPUT_FILETYPE_SFC | default("netcdf") }}"
+ichunk2d:                {{ ufswm.atmos.layout.ichunk2d }}
+jchunk2d:                {{ ufswm.atmos.layout.jchunk2d }}
+ichunk3d:                {{ ufswm.atmos.layout.ichunk3d }}
+jchunk3d:                {{ ufswm.atmos.layout.jchunk3d }}
+kchunk3d:                {{ ufswm.atmos.layout.kchunk3d }}
+ideflate:                {{ ideflate | default(1) }}
+nbits:                   {{ nbits | default(14) }}
+imo:                     {{ ufswm.atmos.grids.lonb }}
+jmo:                     {{ ufswm.atmos.grids.latb }}
+output_fh:               {{ OUTPUT_FH | default(0) }}
+iau_offset:              {{ IAU_OFFSET | default(0) }}

parm/ufs/forecast/gfs/nems/nems.configure.atm.IN

@@ -0,0 +1,8 @@
+# ESMF #
+logKindFlag:            {{ esmf_logkind or "ESMF_LOGKIND_NONE"}} 
+
+EARTH_component_list: ATM
+ATM_model:            fv3
+runSeq::
+  ATM
+::

parm/ufs/forecast/gfs/nems/nems.configure.atm_aero.IN

@@ -0,0 +1,47 @@
+#############################################
+####  NEMS Run-Time Configuration File  #####
+#############################################
+
+# ESMF #
+ logKindFlag:            @[esmf_logkind]
+
+# EARTH #
+EARTH_component_list: ATM CHM
+EARTH_attributes::
+  Verbosity = max
+::
+
+# ATM #
+ATM_model:                      @[atm_model]
+ATM_petlist_bounds:             @[atm_petlist_bounds]
+ATM_attributes::
+  Verbosity = max
+::
+
+# CHM #
+CHM_model:                      @[chm_model]
+CHM_petlist_bounds:             @[chm_petlist_bounds]
+CHM_attributes::
+  Verbosity = max
+::
+
+# Run Sequence #
+runSeq::
+  @@[coupling_interval_fast_sec]
+    ATM phase1
+    ATM -> CHM
+    CHM
+    CHM -> ATM
+    ATM phase2
+  @
+::
+
+# CMEPS variables
+
+DRIVER_attributes::
+  mediator_read_restart = .false.
+::
+
+ALLCOMP_attributes::
+  start_type = startup
+::