Dtc post merge#54
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* Add capability of building ncep_post v8.0.0 library for running in-line post. * Add the capability for building post library on WCOSS phase1/2.
…sio read interface; 2)read pt from model output instead of setting as 0 in fv3gfs nemsio read interface; 3)setting zmid(:,:,l) in regional fv3 read interface. (NOAA-EMC#11)
* update modules for jet * fix for surface momentum flux and drag coefficient
…eflectivity correctly (NOAA-EMC#14)
NOAA-EMC#13) * Change module name machine and physcons to machine_post and physcons_post for solving conflict with FV3 model setting. * Tweak physcons.f
* 1) Add computation of vessel icing; 2) Sync the changes in workflow scripts from gfs v15.2 implementation. * Add new routine CALVESSEL.f for calculating vessel icing. * Add bug fix for writting ID 588.
* Incorprate couple new computations from Jesse Meng such ad ESRH, DCAPE, Critical Angle. * Add a fix for defining LFC HGT. * Use new grib2 abbrev "DCAPE", "DCAPE", "ESP". * Use NCEP table for new variables, e.g. DCAPE. * Add changes for defining ESP. * Add further changes for 8 new varaibles for hrrr/rap implementation.
* Fix allocation issue for PSFC in Block 2 * Fix mods for selecting satellite channels in CALRAD_WCLOUD_newcrtm * Fix grib codes in RQSTFLD.f for wind shear variables * Fix incorrect EL level for TAUX/TAUY calculation * Fix typo in Wind Energy Calculation (UPP ID 411) * Fix index for SEVIRI * Remove extraneous greater than sign * Revert MXLVL back to 70 for short term sync of code * Comment out #if 0 blocks, this syntax fails with some compilers * Correct pname for max updraft helicity * Add community control files * Uncomment new chem code fields. Add compiler directive for commmunity set mxlvls to 07 for grib1 * Move RQSTFLD and READCNTRL to .F files to be preprocessed for COMMCODE compiler directive * Add line accidently deleted for dust25 * Remove READCNTRL.f and RQSTFLD.f since they were moved to .F files for preprocessing
* Add capacity for reading fv3gfs netcdf files. * Initializing 3D radar reflectivity in read interface for gfs in netcdf. * Inlinepost (NOAA-EMC#1) * modified: jobs/JGLOBAL_NCEPPOST, scripts/exgdas_nceppost.sh.ecf, scripts/exgfs_nceppost.sh.ecf, ush/gfs_nceppost.sh Add an option INLINE_POST. If it is true, the grib2 "master" file is produced by the inline post in the forecast model. gfs_nceppost.sh script is then skipped. Also set FILTER=0 to turn off 5wav-filtered data. The UPP still needs to be modified to read in netcdf history files to produce sflux, goes image and gtg products. * add sflux to inlin post * Add for new parm files for running inline post new file: parm/post_tag_gfs128 new file: parm/post_tag_gfs65 new file: parm/postcntrl_gfs_two.xml new file: parm/postxconfig-NT-GFS-TWO.txt * Bug fix of in-line post in ex-scripts. * Add control file at F00 for in-line post. * Teak INITPOST_GFS_NETCDF.f. * Add capacity of processing global FV3 outputs in netcdf in workflow scripts. * Tweak reading netcdf 2D field from FV3 output. * change physcon module to physcon_post in INITPOST_GFS_NETCDF.f. * Sync the change of dbnet alert type for gtg product from NCO.
* added ABI simulated Brightness Temperatures for whole horizontal grid assuming nadir geometry * switched RQSTFLDS slots for ABI simulated BT * Add WMO_Sensor_Id and WMO_Satellite_Id for abi. * 1)Add abi nadir BT in gfs v16 simulated satellite product. 2)Label abi nadir BT as grib2 NCEP local table.
…on (NOAA-EMC#18) * Output 3D WAFS products to standard atmospheric pressuer levels, not on model pressure levels. 1. 3D WAFS products include U/V/T/RH/VVEL/ABSV, icing and GTG. 2. GTG processing becomes part of WAFS product processing. 3. New code sorc/ncep_post.fd/MDL2STD_P.f is in charge of this. 4. sorc/ncep_post.fd/FDLVL.f is modified to process multiple 3D fields on the same vertical levels. 5. Modified for control file in sorc/ncep_post.fd/SET_LVLSXML.f 6. New control files for WAFS analysis, FF 03-36 and FF >=42 7. Icing and GTG is moved from MDL2P to MDL2STD_P. 8. sorc/ncep_post.fd/CALVOR.f is modified to take of SPVAL input values. 9. parm/post_avblflds.xml moves icing and GTG from ISOBARIC_SFC to STD_ISOBARIC_SFC, add U/V/T/RH/VVEL/ABSV on STD_ISOBARIC_SFC 10. scripts/exgfs_nceppost.sh.ecf removed GTG and added WAFS 11. Added sorc/ncep_post_gtg.fd and modified sorc/build_ncep_post.sh to keep GTG code private * Make a clean copy of UPP WAFS branch for general UPP
* 1) Add extra fields in pgrb2 data set for chgres genrating ICs and boundary condictions for the public release; 2) Remove hard-code user defined control file name. * Commit missed files. * 1)Correctly cap percent frozen rain to (0,1); 2)Set default UPP control file name as postxconfig-NT.txt. * Bug fix for ID 968.
* Output 3D WAFS products to standard atmospheric pressuer levels, not on
model pressure levels.
1. 3D WAFS products include U/V/T/RH/VVEL/ABSV, icing and GTG.
2. GTG processing becomes part of WAFS product processing.
3. New code sorc/ncep_post.fd/MDL2STD_P.f is in charge of this.
4. sorc/ncep_post.fd/FDLVL.f is modified to process multiple 3D fields
on the same vertical levels.
5. Modified for control file in sorc/ncep_post.fd/SET_LVLSXML.f
6. New control files for WAFS analysis, FF 03-36 and FF >=42
7. Icing and GTG is moved from MDL2P to MDL2STD_P.
8. sorc/ncep_post.fd/CALVOR.f is modified to take of SPVAL input values.
9. parm/post_avblflds.xml moves icing and GTG from ISOBARIC_SFC to
STD_ISOBARIC_SFC, add U/V/T/RH/VVEL/ABSV on STD_ISOBARIC_SFC
10. scripts/exgfs_nceppost.sh.ecf removed GTG and added WAFS
11. Added sorc/ncep_post_gtg.fd and modified sorc/build_ncep_post.sh
to keep GTG code private
* Make a clean copy of UPP WAFS branch for general UPP
* Add underground interpolation to WAFS related fields and
FDLVL_MASS subroutine is modified
* update modules for jet * update for regular lat-lon grids to FV3 output change on coordinate
* 1)Update with g2tmp/1.6.0; 2)Sync new routines into makefile for building post library. * Switch to intel/16.3.210 for Cray. * Upgrade with g2tmpl v1.6.0 on Hera.
* Remove unnessrary print outs in UPP code. * Reduce more print outs.
…by-zero error when run in debug mode. Currently filled with 'k' which fills with zeros Needs to fill with 'll' which is what's being filled within the larger loop and different index value than 'k'
…uild in debug mode
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…erturbations (NOAA-EMC#239) * Update .gitmodules and submodule pointers for ccpp-framework and ccpp-physics for gsl/develop branch * RUC ice for gsl/develop (replaces NOAA-EMC#54 and NOAA-EMC#56) (NOAA-EMC#60) Implementation of RUC LSM ice model in CCPP * Fix bug in gfsphysics/GFS_layer/GFS_typedefs.F90 from merge * Remove lsm_ruc_sfc_sice from suite FV3_GSD_v0_unified_ugwp_suite and update submodule pointer for ccpp-physics * Remove sfc_sice from ccpp/suites/suite_FV3_GSD_v0_unified_ugwp_suite.xml * Update gsl/develop from develop 2020/12/08 (NOAA-EMC#61) * Fix for updating stochastic physics on separate time-step. (NOAA-EMC#199) This bug fix allows the random patterns in the stochastic physics persist the for a period of time (defined as SKEBINT,SPPTINT, etc.) before calculating new patterns. The fix is to move the allocation of the saved variables into the init section of stochastic_physics_wrapper, and remove the deallocates in the run section. * Bug fixes in (1) running with frac_grid=T and GFDL MP and (2) restarting with frac_grid=T (NOAA-EMC#204) * -- Pointing to Moorthi's modifications in ccpp/physics, which fixed the crash when running GFDL MP with frac_grid=T; -- Not setting fice to zero in order to leave lake ice untouched; -- Restart in the coupled model with the default physics is reproducible, if bad water temperature is only filtered at initial time; Co-authored-with: Shrinivas Moorthi <shrinivas.moorthi@noaa.gov> Co-authored-with: Denise Worthen <Denise.Worthen@noaa.gov> * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update submodule pointer for ccpp-physics - MYNN surface layer updates and bugfixes (NOAA-EMC#63) * Land stochastic perturbations (wrapper PR for NOAA-EMC#65) (NOAA-EMC#68) * Move initialization of stochastic physics after the physics initialization in CCPP. * Add albedo variables to land perturbations with lndp_type=2 option. Change to accommodate soil perturbations with RUC LSM. * Max/min soil moisture variables are introduced via GFS_Control_type variables instead of through the use of namelist_soilveg*. This is a more flexible way for different LSMs. * Added pores and resid variables for max/min soil moisture to GFS_typedefs.f90. * Remove tracer_sanitizer from all suites and from CCPP prebuild config * Add namelist option to apply land surface perturbations at every time step, clean up stochastic_physics/stochastic_physics_wrapper.F90 * Stochastic land perturbations: add roughness length over land to the perturbed variables (NOAA-EMC#70) * Added roughness length over land to the perturbed variables. * Bugfix in gfsphysics/GFS_layer/GFS_typedefs.F90: remove Diag%cldcov, in particular the reset call because the variable is not allocated * Update .gitmodules and submodule pointer for GFDL_atmos_cubed_sphere for code review and testing * Revert change to .gitmodules for ccpp-physics, update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for GFDL_atmos_cubed_sphere Co-authored-by: DomHeinzeller <58610420+DomHeinzeller@users.noreply.github.com> Co-authored-by: Phil Pegion <38869668+pjpegion@users.noreply.github.com> Co-authored-by: shansun6 <48043606+shansun6@users.noreply.github.com> Co-authored-by: tanyasmirnova <tanya.smirnova@noaa.gov>
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* Update .gitmodules and submodule pointers for ccpp-framework and ccpp-physics for gsl/develop branch * RUC ice for gsl/develop (replaces NOAA-EMC#54 and NOAA-EMC#56) (NOAA-EMC#60) Implementation of RUC LSM ice model in CCPP * Squash-merge climbfuji:rucice_gfsv16dzmin into gsl/develop * Fix bug in gfsphysics/GFS_layer/GFS_typedefs.F90 from merge * Remove lsm_ruc_sfc_sice from suite FV3_GSD_v0_unified_ugwp_suite and update submodule pointer for ccpp-physics * Remove sfc_sice from ccpp/suites/suite_FV3_GSD_v0_unified_ugwp_suite.xml * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics Co-authored-by: Dom Heinzeller <climbfuji@ymail.com> * Update gsl/develop from develop 2020/12/08 (NOAA-EMC#61) * Fix for updating stochastic physics on separate time-step. (NOAA-EMC#199) This bug fix allows the random patterns in the stochastic physics persist the for a period of time (defined as SKEBINT,SPPTINT, etc.) before calculating new patterns. The fix is to move the allocation of the saved variables into the init section of stochastic_physics_wrapper, and remove the deallocates in the run section. * Bug fixes in (1) running with frac_grid=T and GFDL MP and (2) restarting with frac_grid=T (NOAA-EMC#204) * -- Pointing to Moorthi's modifications in ccpp/physics, which fixed the crash when running GFDL MP with frac_grid=T; -- Not setting fice to zero in order to leave lake ice untouched; -- Restart in the coupled model with the default physics is reproducible, if bad water temperature is only filtered at initial time; Co-authored-with: Shrinivas Moorthi <shrinivas.moorthi@noaa.gov> Co-authored-with: Denise Worthen <Denise.Worthen@noaa.gov> * Revert change to .gitmodules and update submodule pointer for ccpp-physics Co-authored-by: Phil Pegion <38869668+pjpegion@users.noreply.github.com> Co-authored-by: shansun6 <48043606+shansun6@users.noreply.github.com> * Update submodule pointer for ccpp-physics - MYNN surface layer updates and bugfixes (NOAA-EMC#63) * Land stochastic perturbations (wrapper PR for NOAA-EMC#65) (NOAA-EMC#68) * Move initialization of stochastic physics after the physics initialization in CCPP. * Add albedo variables to land perturbations with lndp_type=2 option. Change to accommodate soil perturbations with RUC LSM. * Max/min soil moisture variables are introduced via GFS_Control_type variables instead of through the use of namelist_soilveg*. This is a more flexible way for different LSMs. * Added pores and resid variables for max/min soil moisture to GFS_typedefs.f90. * Remove tracer_sanitizer from all suites and from CCPP prebuild config * Add namelist option to apply land surface perturbations at every time step, clean up stochastic_physics/stochastic_physics_wrapper.F90 Co-authored-by: tanyasmirnova <tanya.smirnova@noaa.gov> * Stochastic land perturbations: add roughness length over land to the perturbed variables (NOAA-EMC#70) * Added roughness length over land to the perturbed variables. * Bugfix in gfsphysics/GFS_layer/GFS_typedefs.F90: remove Diag%cldcov, in particular the reset call because the variable is not allocated Co-authored-by: Dom Heinzeller <climbfuji@ymail.com> * Update gsl/develop from develop 2021/02/22 (NOAA-EMC#73) * Fix for updating stochastic physics on separate time-step. (NOAA-EMC#199) This bug fix allows the random patterns in the stochastic physics persist the for a period of time (defined as SKEBINT,SPPTINT, etc.) before calculating new patterns. The fix is to move the allocation of the saved variables into the init section of stochastic_physics_wrapper, and remove the deallocates in the run section. * Bug fixes in (1) running with frac_grid=T and GFDL MP and (2) restarting with frac_grid=T (NOAA-EMC#204) * -- Pointing to Moorthi's modifications in ccpp/physics, which fixed the crash when running GFDL MP with frac_grid=T; -- Not setting fice to zero in order to leave lake ice untouched; -- Restart in the coupled model with the default physics is reproducible, if bad water temperature is only filtered at initial time; Co-authored-with: Shrinivas Moorthi <shrinivas.moorthi@noaa.gov> Co-authored-with: Denise Worthen <Denise.Worthen@noaa.gov> * jedi-ufs with ccpp-physics submodule update (contains NOAA-EMC#201) (NOAA-EMC#211) * updated CMakeLists.txt * Changes for JEDI linking/control * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Revert change to .gitmodules and update submodule pointer for ccpp-physics Co-authored-by: Mark Potts <Mark.Potts@noaa.gov> * Final-final GFS v16 updates / restart reproducibility bugfixes (NOAA-EMC#212) * updates the submodule pointer for ccpp-physics for the final-final (!) GFS v16 physics updates * fixes a bug in io/FV3GFS_io.F90 to obtain restart reproducibility for uncoupled and coupled runs - contributed by @SMoorthi-emc Co-authored-by: Shrinivas.Moorthi <Shrinivas.Moorthi@noaa.gov> * RRTMGP coupling to Thompson MP in ccpp-physics (NOAA-EMC#208) * Updated physics. Added infrastructure to FV3 to handle new GP capabilities. Thompson MP, LW scattering, Use of LW-jacobian to update surface tendencies. * Some small changes to work with physics improvements to RRTMGP. * RRTMGP working with Thompson MP. * Updated .gitmodules. * Updated physics. New interstitials. * Synced with NCAR/master * Updated ccpp-physics * Updated physics submodule. * Cleanup * Update physics * Updated physics submodule pointer. * Updated physics submodule hash. * Minor bug fixes to CCPP UGWP (update submodule pointer for ccpp-physics) (NOAA-EMC#216) Update the submodule pointer for ccpp-physics for minor bugfixes in CCPP's Unified Gravity Wave Drag parameterization. * Remove IPD (step 1) (NOAA-EMC#215) Remove all IPD source files that are not needed to compile with CCPP. Update gfsphysics/CMakeLists.txt and gfsphysics/GFS_layer/GFS_driver.F90 so that the code compiles after removing IPD sources. Also: update submodule pointer for GFDL_atmos_cubed_sphere to include PR NOAA-EMC/GFDL_atmos_cubed_sphere#48 ("Removed use of mpp_node for use with FMS 2020.04"). * Update submodule pointers for ccpp-framework (ccpp_prebuild bugfix) and ccpp-physics (RRTMGP GFDL-MP bugfix) (NOAA-EMC#218) Update the submodule pointers for ccpp-framework and ccpp-physics for the changes described in NCAR/ccpp-framework#343 and NCAR/ccpp-physics#536. * Remove unnecessary SIMD instruction sets from ccpp/CMakeLists.txt (NOAA-EMC#220) * Remove additional/unnecessary SIMD instruction sets from ccpp/CMakeLists.txt * Implementation of CCPP timestep_init and timestep_final phases (NOAA-EMC#217) - replace calls to CCPP step `time_vary` with `timestep_init` in `atmos_model.F90`, add call to CCPP step `timestep_final` - update `ccpp/driver/CCPP_driver.F90` with calls to CCPP `timestep_init` and `timestep_final` - add `h2o_def.f` and `ozne_def.` to `ccpp_prebuild_config.py` - update of `gfsphysics/GFS_layer/GFS_typedefs.F90`: cleanup work for o3 and h2o physics (required by the updates to the CCPP time vary physics) - update metadata in `gfsphysics/GFS_layer/GFS_typedefs.meta` for the above changes, and clean up the index used for the surface wind enhancement due to convection in the `phy_f2d` array (use proper index, not just the last entry in the array) * add radiation_clouds_thompson_dependency in ccpp physics (NOAA-EMC#225) * using radiation_clouds_thompson_dependency ccpp physics branch * point to ccpp master branch * Remove IPD steps 3 and 5 (NOAA-EMC#224) * Implementation of CCPP timestep_init and timestep_final phases in fv3atm; cleanup work in GFS_typedefs for o3 and h2o physics as a result of the changes to the time vary physics in CCPP * Use proper index variable for surface wind enhancement due to convection in phy_f2d array in GFS_typedefs.{F90,meta}, move code to clear diagnostic buckets using GFS DDT bound procedures from atmos_model.F90 to CCPP_driver.F90 * First step of cleanup process: remove CCPP preprocessor directives, remove parts of unused IPD code, update cmake build system, Delete IPD source code, Replace IPD DDTs with GFS DDTs, Bugfix in atmos_model.F90; add missing call to GFS_externaldiag_populate, Move contents of gfsphysics/{CCPP_layer,GFS_layer} to ccpp/{data,driver}, entirely deleted IPD typedefs, Rename module GFS_driver to GFS_init * Fix indentation in ccpp/data/CMakeLists.txt and ccpp/driver/CMakeLists.txt * Add logic to set DYN32 depending on 32BIT setting * Pass preprocessor directive GFS_TYPES to dycore to enable use of GFS data types * Compile GFS_diagnostics.F90 without optimization, this leads to out of memory errors on wcoss_dell_p3 * Add CCPP rrtmgp fix (NOAA-EMC#237) * ccpp physics merged with top of master * point back to ccpp master branch * Update develop from NOAA-GSL: RUC ice, MYNN sfclay, stochastic land perturbations (NOAA-EMC#239) * Update .gitmodules and submodule pointers for ccpp-framework and ccpp-physics for gsl/develop branch * RUC ice for gsl/develop (replaces NOAA-EMC#54 and NOAA-EMC#56) (NOAA-EMC#60) Implementation of RUC LSM ice model in CCPP * Fix bug in gfsphysics/GFS_layer/GFS_typedefs.F90 from merge * Remove lsm_ruc_sfc_sice from suite FV3_GSD_v0_unified_ugwp_suite and update submodule pointer for ccpp-physics * Remove sfc_sice from ccpp/suites/suite_FV3_GSD_v0_unified_ugwp_suite.xml * Update gsl/develop from develop 2020/12/08 (NOAA-EMC#61) * Fix for updating stochastic physics on separate time-step. (NOAA-EMC#199) This bug fix allows the random patterns in the stochastic physics persist the for a period of time (defined as SKEBINT,SPPTINT, etc.) before calculating new patterns. The fix is to move the allocation of the saved variables into the init section of stochastic_physics_wrapper, and remove the deallocates in the run section. * Bug fixes in (1) running with frac_grid=T and GFDL MP and (2) restarting with frac_grid=T (NOAA-EMC#204) * -- Pointing to Moorthi's modifications in ccpp/physics, which fixed the crash when running GFDL MP with frac_grid=T; -- Not setting fice to zero in order to leave lake ice untouched; -- Restart in the coupled model with the default physics is reproducible, if bad water temperature is only filtered at initial time; Co-authored-with: Shrinivas Moorthi <shrinivas.moorthi@noaa.gov> Co-authored-with: Denise Worthen <Denise.Worthen@noaa.gov> * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update submodule pointer for ccpp-physics - MYNN surface layer updates and bugfixes (NOAA-EMC#63) * Land stochastic perturbations (wrapper PR for NOAA-EMC#65) (NOAA-EMC#68) * Move initialization of stochastic physics after the physics initialization in CCPP. * Add albedo variables to land perturbations with lndp_type=2 option. Change to accommodate soil perturbations with RUC LSM. * Max/min soil moisture variables are introduced via GFS_Control_type variables instead of through the use of namelist_soilveg*. This is a more flexible way for different LSMs. * Added pores and resid variables for max/min soil moisture to GFS_typedefs.f90. * Remove tracer_sanitizer from all suites and from CCPP prebuild config * Add namelist option to apply land surface perturbations at every time step, clean up stochastic_physics/stochastic_physics_wrapper.F90 * Stochastic land perturbations: add roughness length over land to the perturbed variables (NOAA-EMC#70) * Added roughness length over land to the perturbed variables. * Bugfix in gfsphysics/GFS_layer/GFS_typedefs.F90: remove Diag%cldcov, in particular the reset call because the variable is not allocated * Update .gitmodules and submodule pointer for GFDL_atmos_cubed_sphere for code review and testing * Revert change to .gitmodules for ccpp-physics, update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for GFDL_atmos_cubed_sphere Co-authored-by: DomHeinzeller <58610420+DomHeinzeller@users.noreply.github.com> Co-authored-by: Phil Pegion <38869668+pjpegion@users.noreply.github.com> Co-authored-by: shansun6 <48043606+shansun6@users.noreply.github.com> Co-authored-by: tanyasmirnova <tanya.smirnova@noaa.gov> * Dycore change to add an option to zero-gradient BC for height advection and change dz_min as a namelist input (NOAA-EMC#232) * Point dycore to a personal branch * Point to new version of dycore * Update the dycore version * Update the dycore version * Point to NOAA-EMC dev/emc dycore branch * Remove gnumake build remnants, change v16beta to v16 (NOAA-EMC#234) * Remove gnumake files * Replace v16beta with v16 for all CCPP suites * Remove unused CCPP_INCLUDE_DIRS/CCPP_LIB_DIRS from ccpp/CMakeLists.txt * Move LSM vegetation lookup tables into CCPP, clean up RUC snow cover on ice initialization (remove IPD step 2) (NOAA-EMC#244) * Move LSM vegetation lookup tables into CCPP, clean up RUC snow cover on ice initialization * Revert change to .gitmodules and update submodule pointer for ccpp-physics * UGWP v0 v1 combined (NOAA-EMC#241) * .gitmodules/gsl atmos-cubed cccp-fram cccp/physics * update fv3atm from NOAA-EMC Jan 9 * new suite_FV3_GFS_v16b_ugwpv1.xml and modifications Jan 11/2021 * Added new logical flag do_ugwp_v0_nst_only which allows non-stationary drag from ugwp_v0 to be run with GSL drag suite * Fix formatting in ccpp/data/GFS_typedefs.* * Clean up allocation of arrays in ccpp/data/GFS_typedefs.F90, add active attribute (pass 1) to ccpp/data/GFS_typedefs.meta, strip trailing whitespaces from both * Update and cleanup of metadata for UGWPv0, UGWPv1, drag suite * Reorganize UGWP diagnostic variables in data/GFS_typedefs.{F90,meta} * Bugfix for uninitialized data in ccpp/data/GFS_typedefs.F90 * Update submodule pointer for ccpp-physics * Allocate 3d diagnostic arrays as dummy arrays if not used Co-authored-by: valery.yudin <valery.yudin@noaa.gov> Co-authored-by: Michael Toy <michael.toy@noaa.gov> * SDF for GFSv16 with Thompson (NOAA-EMC#238) * SDF for GFSv16 with Thompson * Delete suite_FV3_GFS_v16beta_thompson.xml * update to new commit of Thompson MP in ccpp physics Co-authored-by: Phil Pegion <38869668+pjpegion@users.noreply.github.com> Co-authored-by: shansun6 <48043606+shansun6@users.noreply.github.com> Co-authored-by: Mark Potts <Mark.Potts@noaa.gov> Co-authored-by: Shrinivas.Moorthi <Shrinivas.Moorthi@noaa.gov> Co-authored-by: dustinswales <dustin.swales@noaa.gov> Co-authored-by: Jun Wang <37633869+junwang-noaa@users.noreply.github.com> Co-authored-by: XiaqiongZhou-NOAA <48254930+XiaqiongZhou-NOAA@users.noreply.github.com> Co-authored-by: valery.yudin <valery.yudin@noaa.gov> Co-authored-by: Michael Toy <michael.toy@noaa.gov> Co-authored-by: XiaSun-NOAA <58949533+XiaSun-NOAA@users.noreply.github.com> * Remove inconsistencies in computation of air density with Thompson MP (NOAA-EMC#74) * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update thompson mp 20210213 (NOAA-EMC#567) for gsl/develop (NOAA-EMC#75) * Add logical convert_dry_rho for Thompson MP, hardcoded to false * Initialize all variables to NaN in ccpp-physics in DEBUG mode * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-framework and ccpp-physics * &gfs_physics_nml print_diff_pgr=.true. will print per-timestep pgr change stats * point to sam's repository for atmos_cubed_sphere * Add units and lat/lon to per-timestep pgr stats * Rebase atmos_cubed_sphere to NOAA-GFDL dev/emc branch * Print mean pgr change as hPa/hr and other pgr data as bars. * Remove changes from atmos_cubed_sphere and simplify atmos_model.F90 changes. * print mean abs change instead of mean change in pgr * Update .gitmodules and submodule pointers for ccpp-framework and ccpp-physics for code review and testing * Revert change to .gitmodules and update submodule pointers for ccpp-framework and ccpp-physics * clarify one print * More 3D diagnostic tendencies (NOAA-EMC#76) Add diagnostic tendencies for all tracers. Move all d*3dt variables into a 4D sparse array stored as `dtend(i,k,dtidx(tracer,process))` to reduce memory usage. * Fix incorrect units in dtend metadata (NOAA-EMC#82) * Fix incorrect units in dtend metadata * Make the tracer tendency units mandatory. * Add SO2 tendency units (NOAA-EMC#86) * Update .gitmodules and submodule pointers for ccpp-framework and ccpp-physics * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-framework and ccpp-physics * dtend: add missing tendencies and fix bugs in convection tendencies (NOAA-EMC#92) * Fix incorrect units in dtend metadata * Point to corresponding ccpp/physics branch * fixes to dtend support: 1. Store rtg (AKA clw AKA qtr) instead of gq0 in DCNV and SCNV pre/post for schemes that use convective transport. Tracers handled solely by convective transport (ones not in rtg) are reported as convective transport tendencies. Tendencies for variables in rtg are reported as dcnv and scnv tendencies. 2. Report TKE tendencies from gfs v16 PBL. 3. Add diagnostic tendencies to drag_suite 4. Only report rayleigh damping tendencies if rayleigh damping is enabled 5. List all possible diagnostic tendencies, even if they are not enabled. In the output, label them "selected" or "disabled." 6. Add phys_tend to the fv3_rap suite. * Merge gsl/develop into ccpp/physics * Add phys_tend to suite_FV3_GSD_SAR and remove some debug prints * Remove some debug prints and commented-out code. * Correct error in dtend variable availability list print. * Enable convtrans diagnostic tendencies for number concentrations and qrimef. * Disable cnvtrans diagnostic tendencies for schemes that do their own diagnostic tendency reporting. * Point to gsl repositories * Update .gitmodules for code review and regression testing * Formatting changes in ccpp/data/GFS_typedefs.F90 * Update submodule pointer for ccpp-physics * Update submodule pointer for ccpp-physics * Point update_gsl_develop_from_develop_20210531 to NOAA-GSL branches of ccpp/physics and ccpp/framework * GF aerosols updates and tunings * GF aerosol updates and tunings from physics * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Update submodule pointer for ccpp-physics * Update submodule pointer for ccpp-physics * Update submodule pointer for ccpp-physics * Make aod_gf and cactiv_m work appriopriately for restarts Minor code cleanup * Add missing metadata for new GF arrays * Bug fix in ccpp/driver/GFS_restart.F90 for GF * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Add missing active attribute for aod_gf in ccpp/data/GFS_typedefs.meta * Update submodule pointer for ccpp-physics * Update submodule pointer for ccpp-physocs * Change name of sfc_name2(39) from 'weasd' to 'weasdl' in io/FV3GFS_io.F90 * Revert change to .gitmodules and update submodule pointers for ccpp-framework and ccpp-physics * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Changed dimensions of variables tsnow_land and sncovr_ice from horizontal_dimension to horizontal_loop_extent * Added Flake to two suites: FV3_GSD_v0 and FV3_HRRR. * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update to ccpp/data/GFS_typedefs.meta following CCPP standard names update * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointers for ccpp-physics and ccpp-framework * Revert change to .gitmodules and update submodule pointers for ccpp-framework and ccpp-physics * Turn on GF aerosol-awareness Tune clwdet (cloud water detrainment) Make evfact (evaporation factor) and radiation factor scale-aware * Update .gitmodules and submodule pointers for ccpp-framework and ccpp-physics for code review and testing * Switch back to NCAR ccpp-framework main, abandon NOAA-GSL fork * Update submodule pointer for ccpp-physics * Update submodule pointer for ccpp/physics * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update .gitmodules and submodule pointer for ccpp-physics for code review aand testing * Update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Update submodule pointer for ccpp-physics * Revert .gitmodules and update submodule pointer for ccpp-physics * Revert change to .gitmodules and update submodule pointer for ccpp-physics * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Revert .gitmodules and update submodule pointer for ccpp-physics * Update CCPP metadata and several suite defiition files for new GSL regression tests * Bug fix for compiling with Intel on macOS, remove clutter from stdout in io/FV3GFS_io.F90 * Update .gitmodules and submodule pointer for ccpp-physics for code review and testing * Rename GSL suites to RAP suites, add new RAP suites * rename suite FV3_GSD_v0 to FV3_RAP_noah_sfcdiff_cires_ugwp, delete suite FV3_SAR * Update submodule pointer for ccpp-physics * Address reviewer comments * Update submodule pointer for ccpp-physics * Revert .gitmodules and update submodule pointer for ccpp-physics Co-authored-by: DomHeinzeller <58610420+DomHeinzeller@users.noreply.github.com> Co-authored-by: Phil Pegion <38869668+pjpegion@users.noreply.github.com> Co-authored-by: shansun6 <48043606+shansun6@users.noreply.github.com> Co-authored-by: tanyasmirnova <tanya.smirnova@noaa.gov> Co-authored-by: tanyasmirnova <38667904+tanyasmirnova@users.noreply.github.com> Co-authored-by: Mark Potts <Mark.Potts@noaa.gov> Co-authored-by: Shrinivas.Moorthi <Shrinivas.Moorthi@noaa.gov> Co-authored-by: dustinswales <dustin.swales@noaa.gov> Co-authored-by: Jun Wang <37633869+junwang-noaa@users.noreply.github.com> Co-authored-by: XiaqiongZhou-NOAA <48254930+XiaqiongZhou-NOAA@users.noreply.github.com> Co-authored-by: valery.yudin <valery.yudin@noaa.gov> Co-authored-by: Michael Toy <michael.toy@noaa.gov> Co-authored-by: XiaSun-NOAA <58949533+XiaSun-NOAA@users.noreply.github.com> Co-authored-by: samuel.trahan <Samuel.Trahan@noaa.gov> Co-authored-by: Samuel Trahan (NOAA contractor) <39415369+SamuelTrahanNOAA@users.noreply.github.com> Co-authored-by: hannah barnes <hannah.barnes@noaa.gov> Co-authored-by: Hannah C Barnes <38660891+hannahcbarnes@users.noreply.github.com>
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