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Merged
RussTreadon-NOAA merged 7 commits into from
Aug 19, 2020
Merged

Release/gfsda.v16.0.0 restructure #39

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f6bc0f6
Add variable to JJOB and ex scripts for new atmos subdirectory
KateFriedman-NOAA Jul 16, 2020
15f35da
Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into re…
KateFriedman-NOAA Jul 20, 2020
263c10a
Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into re…
KateFriedman-NOAA Jul 22, 2020
aff4da8
Small text fix in JGDAS_VMINMON
KateFriedman-NOAA Jul 23, 2020
b53db5d
Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into re…
KateFriedman-NOAA Jul 23, 2020
283ab3a
Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into re…
KateFriedman-NOAA Jul 29, 2020
5fd6b23
Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into re…
KateFriedman-NOAA Aug 17, 2020
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20 changes: 10 additions & 10 deletions jobs/JGDAS_ENKF_CHGRES
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Original file line number Diff line number Diff line change
Expand Up @@ -58,6 +58,7 @@ export pgmerr=errfile
##############################################
export CDATE=${CDATE:-${PDY}${cyc}}
export CDUMP=${CDUMP:-${RUN:-"gfs"}}
export COMPONENT=${COMPONENT:-atmos}
if [ $RUN_ENVIR = "nco" ]; then
export ROTDIR=${COMROOT:?}/$NET/$envir
fi
Expand All @@ -81,22 +82,21 @@ export ASUFFIX=${ASUFFIX:-$SUFFIX}


if [ $RUN_ENVIR = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then
export COMIN=${COMIN:-$ROTDIR/$RUN.$PDY/$cyc}
export COMOUT=${COMOUT:-$ROTDIR/$RUN.$PDY/$cyc}
export COMOUT_ENS=${COMOUT_ENS:-$ROTDIR/enkfgdas.$PDY/$cyc}
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc}
export COMIN=${COMIN:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMOUT=${COMOUT:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMOUT_ENS=${COMOUT_ENS:-$ROTDIR/enkfgdas.$PDY/$cyc/$COMPONENT}
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc/$COMPONENT}
else
export COMOUT="$ROTDIR/$CDUMP.$PDY/$cyc"
export COMOUT_ENS="$ROTDIR/enkfgdas.$PDY/$cyc"
export COMOUT="$ROTDIR/$CDUMP.$PDY/$cyc/$COMPONENT"
export COMOUT_ENS="$ROTDIR/enkfgdas.$PDY/$cyc/$COMPONENT"
export COMIN_OBS="$DMPDIR/$CDATE/$CDUMP"
export COMIN_GES_OBS="$DMPDIR/$GDATE/$GDUMP"
fi
mkdir -m 775 -p $COMOUT
# COMIN_GES and COMIN_GES_ENS are used in exglobal script
# TO DO: Map NCO's directory into these variables
export COMIN_GES="$ROTDIR/$GDUMP.$gPDY/$gcyc"
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc"
export COMIN_GES="$ROTDIR/$GDUMP.$gPDY/$gcyc/$COMPONENT"
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc/$COMPONENT"

###############################################################
# Run relevant exglobal script
Expand Down
4 changes: 2 additions & 2 deletions jobs/JGDAS_ENKF_FCST
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Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,7 @@ export pgmerr=errfile
##############################################
export CDATE=${CDATE:-${PDY}${cyc}}
export CDUMP=${CDUMP:-${RUN:-"gdas"}}
export COMPONENT=${COMPONENT:-atmos}
if [ $RUN_ENVIR = "nco" ]; then
export ROTDIR=${COMROOT:?}/$NET/$envir
fi
Expand All @@ -69,8 +70,7 @@ fi
export CASE=$CASE_ENKF

# COMOUT is used in exglobal script
# TO DO: Map NCO's directory into these variables
export COMOUT="$ROTDIR/enkf$CDUMP.$PDY/$cyc"
export COMOUT="$ROTDIR/enkf$CDUMP.$PDY/$cyc/$COMPONENT"


# Forecast length for EnKF forecast
Expand Down
6 changes: 3 additions & 3 deletions jobs/JGDAS_ENKF_POST
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Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,7 @@ export pgmerr=errfile
##############################################
export CDATE=${CDATE:-${PDY}${cyc}}
export CDUMP=${CDUMP:-${RUN:-"gdas"}}
export COMPONENT=${COMPONENT:-atmos}
if [ $RUN_ENVIR = "nco" ]; then
export ROTDIR=${COMROOT:?}/$NET/$envir
fi
Expand All @@ -70,9 +71,8 @@ export GFS_NCIO=${GFS_NCIO:-"YES"}
export PREFIX="${CDUMP}.t${cyc}z."

# COMIN, COMOUT are used in exglobal script
# TO DO: Map NCO's directory into these variables
export COMIN="$ROTDIR/enkf$CDUMP.$PDY/$cyc"
export COMOUT="$ROTDIR/enkf$CDUMP.$PDY/$cyc"
export COMIN="$ROTDIR/enkf$CDUMP.$PDY/$cyc/$COMPONENT"
export COMOUT="$ROTDIR/enkf$CDUMP.$PDY/$cyc/$COMPONENT"


export LEVS=$((LEVS-1))
Expand Down
14 changes: 7 additions & 7 deletions jobs/JGDAS_ENKF_RECENTER
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Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,7 @@ export pgmerr=errfile
##############################################
export CDATE=${CDATE:-${PDY}${cyc}}
export CDUMP=${CDUMP:-${RUN:-"gdas"}}
export COMPONENT=${COMPONENT:-atmos}
if [ $RUN_ENVIR = "nco" ]; then
export ROTDIR=${COMROOT:?}/$NET/$envir
fi
Expand Down Expand Up @@ -89,19 +90,18 @@ export GSUFFIX=${GSUFFIX:-$SUFFIX}
export ASUFFIX=${ASUFFIX:-$SUFFIX}

if [ $RUN_ENVIR = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc}
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc/$COMPONENT}
else
export COMIN_OBS="$DMPDIR/$CDATE/$CDUMP"
export COMIN_GES_OBS="$DMPDIR/$GDATE/$GDUMP"
fi

# COMIN, COMIN_ENS and COMIN_GES_ENS are used in exglobal script
# TO DO: Map NCO's directory into these variables
export COMIN="$ROTDIR/$CDUMP.$PDY/$cyc"
export COMIN_ENS="$ROTDIR/enkf$CDUMP_ENKF.$PDY/$cyc"
export COMOUT_ENS="$ROTDIR/enkf$CDUMP.$PDY/$cyc"
export COMIN_GES_ENS="$ROTDIR/enkf$CDUMP.$gPDY/$gcyc"
export COMIN="$ROTDIR/$CDUMP.$PDY/$cyc/$COMPONENT"
export COMIN_ENS="$ROTDIR/enkf$CDUMP_ENKF.$PDY/$cyc/$COMPONENT"
export COMOUT_ENS="$ROTDIR/enkf$CDUMP.$PDY/$cyc/$COMPONENT"
export COMIN_GES_ENS="$ROTDIR/enkf$CDUMP.$gPDY/$gcyc/$COMPONENT"


###############################################################
Expand Down
14 changes: 7 additions & 7 deletions jobs/JGDAS_ENKF_SURFACE
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Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,7 @@ export pgmerr=errfile
##############################################
export CDATE=${CDATE:-${PDY}${cyc}}
export CDUMP=${CDUMP:-${RUN:-"gdas"}}
export COMPONENT=${COMPONENT:-atmos}
if [ $RUN_ENVIR = "nco" ]; then
export ROTDIR=${COMROOT:?}/$NET/$envir
fi
Expand Down Expand Up @@ -89,19 +90,18 @@ export GSUFFIX=${GSUFFIX:-$SUFFIX}
export ASUFFIX=${ASUFFIX:-$SUFFIX}

if [ $RUN_ENVIR = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc}
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc/$COMPONENT}
else
export COMIN_OBS="$DMPDIR/$CDATE/$CDUMP"
export COMIN_GES_OBS="$DMPDIR/$GDATE/$GDUMP"
fi

# COMIN, COMIN_ENS and COMIN_GES_ENS are used in exglobal script
# TO DO: Map NCO's directory into these variables
export COMIN="$ROTDIR/$CDUMP.$PDY/$cyc"
export COMIN_ENS="$ROTDIR/enkf$CDUMP_ENKF.$PDY/$cyc"
export COMOUT_ENS="$ROTDIR/enkf$CDUMP.$PDY/$cyc"
export COMIN_GES_ENS="$ROTDIR/enkf$CDUMP.$gPDY/$gcyc"
export COMIN="$ROTDIR/$CDUMP.$PDY/$cyc/$COMPONENT"
export COMIN_ENS="$ROTDIR/enkf$CDUMP_ENKF.$PDY/$cyc/$COMPONENT"
export COMOUT_ENS="$ROTDIR/enkf$CDUMP.$PDY/$cyc/$COMPONENT"
export COMIN_GES_ENS="$ROTDIR/enkf$CDUMP.$gPDY/$gcyc/$COMPONENT"


###############################################################
Expand Down
16 changes: 8 additions & 8 deletions jobs/JGLOBAL_ANALCALC
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Original file line number Diff line number Diff line change
Expand Up @@ -58,6 +58,7 @@ export pgmerr=errfile
##############################################
export CDATE=${CDATE:-${PDY}${cyc}}
export CDUMP=${CDUMP:-${RUN:-"gfs"}}
export COMPONENT=${COMPONENT:-atmos}
if [ $RUN_ENVIR = "nco" ]; then
export ROTDIR=${COMROOT:?}/$NET/$envir
fi
Expand All @@ -81,20 +82,19 @@ export ASUFFIX=${ASUFFIX:-$SUFFIX}


if [ $RUN_ENVIR = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then
export COMIN=${COMIN:-$ROTDIR/$RUN.$PDY/$cyc}
export COMOUT=${COMOUT:-$ROTDIR/$RUN.$PDY/$cyc}
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc}
export COMIN=${COMIN:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMOUT=${COMOUT:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc/$COMPONENT}
else
export COMOUT="$ROTDIR/$CDUMP.$PDY/$cyc"
export COMOUT="$ROTDIR/$CDUMP.$PDY/$cyc/$COMPONENT"
export COMIN_OBS="$DMPDIR/$CDATE/$CDUMP"
export COMIN_GES_OBS="$DMPDIR/$GDATE/$GDUMP"
fi
mkdir -m 775 -p $COMOUT
# COMIN_GES and COMIN_GES_ENS are used in exglobal script
# TO DO: Map NCO's directory into these variables
export COMIN_GES="$ROTDIR/$GDUMP.$gPDY/$gcyc"
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc"
export COMIN_GES="$ROTDIR/$GDUMP.$gPDY/$gcyc/$COMPONENT"
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc/$COMPONENT"


export ATMGES="$COMIN_GES/${GPREFIX}atmf006${GSUFFIX}"
Expand Down
16 changes: 8 additions & 8 deletions jobs/JGLOBAL_ANALDIAG
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Original file line number Diff line number Diff line change
Expand Up @@ -58,6 +58,7 @@ export pgmerr=errfile
##############################################
export CDATE=${CDATE:-${PDY}${cyc}}
export CDUMP=${CDUMP:-${RUN:-"gfs"}}
export COMPONENT=${COMPONENT:-atmos}
if [ $RUN_ENVIR = "nco" ]; then
export ROTDIR=${COMROOT:?}/$NET/$envir
fi
Expand All @@ -81,20 +82,19 @@ export ASUFFIX=${ASUFFIX:-$SUFFIX}


if [ $RUN_ENVIR = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then
export COMIN=${COMIN:-$ROTDIR/$RUN.$PDY/$cyc}
export COMOUT=${COMOUT:-$ROTDIR/$RUN.$PDY/$cyc}
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc}
export COMIN=${COMIN:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMOUT=${COMOUT:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc/$COMPONENT}
else
export COMOUT="$ROTDIR/$CDUMP.$PDY/$cyc"
export COMOUT="$ROTDIR/$CDUMP.$PDY/$cyc/$COMPONENT"
export COMIN_OBS="$DMPDIR/$CDATE/$CDUMP"
export COMIN_GES_OBS="$DMPDIR/$GDATE/$GDUMP"
fi
mkdir -m 775 -p $COMOUT
# COMIN_GES and COMIN_GES_ENS are used in exglobal script
# TO DO: Map NCO's directory into these variables
export COMIN_GES="$ROTDIR/$GDUMP.$gPDY/$gcyc"
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc"
export COMIN_GES="$ROTDIR/$GDUMP.$gPDY/$gcyc/$COMPONENT"
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc/$COMPONENT"


export ATMGES="$COMIN_GES/${GPREFIX}atmf006${GSUFFIX}"
Expand Down
16 changes: 8 additions & 8 deletions jobs/JGLOBAL_ANALYSIS
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Original file line number Diff line number Diff line change
Expand Up @@ -58,6 +58,7 @@ export pgmerr=errfile
##############################################
export CDATE=${CDATE:-${PDY}${cyc}}
export CDUMP=${CDUMP:-${RUN:-"gfs"}}
export COMPONENT=${COMPONENT:-atmos}
if [ $RUN_ENVIR = "nco" ]; then
export ROTDIR=${COMROOT:?}/$NET/$envir
fi
Expand All @@ -81,20 +82,19 @@ export ASUFFIX=${ASUFFIX:-$SUFFIX}


if [ $RUN_ENVIR = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then
export COMIN=${COMIN:-$ROTDIR/$RUN.$PDY/$cyc}
export COMOUT=${COMOUT:-$ROTDIR/$RUN.$PDY/$cyc}
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc}
export COMIN=${COMIN:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMOUT=${COMOUT:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc/$COMPONENT}
else
export COMOUT="$ROTDIR/$CDUMP.$PDY/$cyc"
export COMOUT="$ROTDIR/$CDUMP.$PDY/$cyc/$COMPONENT"
export COMIN_OBS="$DMPDIR/$CDATE/$CDUMP"
export COMIN_GES_OBS="$DMPDIR/$GDATE/$GDUMP"
fi
mkdir -m 775 -p $COMOUT
# COMIN_GES and COMIN_GES_ENS are used in exglobal script
# TO DO: Map NCO's directory into these variables
export COMIN_GES="$ROTDIR/$GDUMP.$gPDY/$gcyc"
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc"
export COMIN_GES="$ROTDIR/$GDUMP.$gPDY/$gcyc/$COMPONENT"
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc/$COMPONENT"


export ATMGES="$COMIN_GES/${GPREFIX}atmf006${GSUFFIX}"
Expand Down
14 changes: 7 additions & 7 deletions jobs/JGLOBAL_ENKF_ANALDIAG
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Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,7 @@ export pgmerr=errfile
##############################################
export CDATE=${CDATE:-${PDY}${cyc}}
export CDUMP=${CDUMP:-${RUN:-"gdas"}}
export COMPONENT=${COMPONENT:-atmos}
if [ $RUN_ENVIR = "nco" ]; then
export ROTDIR=${COMROOT:?}/$NET/$envir
fi
Expand All @@ -81,20 +82,19 @@ export GSUFFIX="${GSUFFIX:-".ensmean${SUFFIX}"}"
export ASUFFIX="${ASUFFIX:-"${SUFFIX}"}"

if [ $RUN_ENVIR = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc}
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc/$COMPONENT}
else
export COMIN_OBS="$DMPDIR/$CDATE/$CDUMP"
export COMIN_GES_OBS="$DMPDIR/$GDATE/$GDUMP"
fi

# COMIN_GES, COMIN_ANL COMIN_GES_ENS, and COMOUT are used in exglobal script
# TO DO: Map NCO's directory into these variables
COMIN_GES_CTL="$ROTDIR/gdas.$gPDY/$gcyc"
export COMIN_ANL="$ROTDIR/$CDUMP.$PDY/$cyc"
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc"
COMIN_GES_CTL="$ROTDIR/gdas.$gPDY/$gcyc/$COMPONENT"
export COMIN_ANL="$ROTDIR/$CDUMP.$PDY/$cyc/$COMPONENT"
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc/$COMPONENT"
export COMIN_GES=$COMIN_GES_ENS
export COMOUT="$ROTDIR/enkf$CDUMP.$PDY/$cyc"
export COMOUT="$ROTDIR/enkf$CDUMP.$PDY/$cyc/$COMPONENT"


export ATMGES_ENSMEAN="$COMIN_GES_ENS/${GPREFIX}atmf006$GSUFFIX"
Expand Down
10 changes: 5 additions & 5 deletions jobs/JGLOBAL_ENKF_INNOVATE_OBS
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Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,7 @@ export pgmerr=errfile
##############################################
export CDATE=${CDATE:-${PDY}${cyc}}
export CDUMP=${CDUMP:-${RUN:-"gdas"}}
export COMPONENT=${COMPONENT:-atmos}
if [ $RUN_ENVIR = "nco" ]; then
export ROTDIR=${COMROOT:?}/$NET/$envir
fi
Expand All @@ -81,11 +82,10 @@ export ASUFFIX="${ASUFFIX:-$SUFFIX}"


# COMIN_GES, COMIN_GES_ENS and COMOUT are used in exglobal script
# TO DO: Map NCO's directory into these variables
COMIN_GES_CTL="$ROTDIR/gdas.$gPDY/$gcyc"
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc"
COMIN_GES_CTL="$ROTDIR/gdas.$gPDY/$gcyc/$COMPONENT"
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc/$COMPONENT"
export COMIN_GES=$COMIN_GES_ENS
export COMOUT="$ROTDIR/enkf$CDUMP.$PDY/$cyc"
export COMOUT="$ROTDIR/enkf$CDUMP.$PDY/$cyc/$COMPONENT"


export ATMGES_ENSMEAN="$COMIN_GES_ENS/${GPREFIX}atmf006.ensmean$GSUFFIX"
Expand Down Expand Up @@ -132,7 +132,7 @@ status=$?


# Double check the status of members in ENSGRP
EOMGGRP=$ROTDIR/enkf${CDUMP}.$PDY/$cyc/eomg.grp${ENSGRP}
EOMGGRP=$ROTDIR/enkf${CDUMP}.$PDY/$cyc/$COMPONENT/eomg.grp${ENSGRP}
npass=0
if [ -f $EOMGGRP ]; then
npass=$(grep "PASS" $EOMGGRP | wc -l)
Expand Down
14 changes: 7 additions & 7 deletions jobs/JGLOBAL_ENKF_SELECT_OBS
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Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,7 @@ export pgmerr=errfile
##############################################
export CDATE=${CDATE:-${PDY}${cyc}}
export CDUMP=${CDUMP:-${RUN:-"gdas"}}
export COMPONENT=${COMPONENT:-atmos}
if [ $RUN_ENVIR = "nco" ]; then
export ROTDIR=${COMROOT:?}/$NET/$envir
fi
Expand All @@ -81,20 +82,19 @@ export GSUFFIX="${GSUFFIX:-".ensmean${SUFFIX}"}"
export ASUFFIX="${ASUFFIX:-"${SUFFIX}"}"

if [ $RUN_ENVIR = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc}
export COMIN_OBS=${COMIN_OBS:-$ROTDIR/$RUN.$PDY/$cyc/$COMPONENT}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$ROTDIR/$GDUMP.$gPDY/$gcyc/$COMPONENT}
else
export COMIN_OBS="$DMPDIR/$CDATE/$CDUMP"
export COMIN_GES_OBS="$DMPDIR/$GDATE/$GDUMP"
fi

# COMIN_GES, COMIN_ANL COMIN_GES_ENS, and COMOUT are used in exglobal script
# TO DO: Map NCO's directory into these variables
COMIN_GES_CTL="$ROTDIR/gdas.$gPDY/$gcyc"
export COMIN_ANL="$ROTDIR/$CDUMP.$PDY/$cyc"
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc"
COMIN_GES_CTL="$ROTDIR/gdas.$gPDY/$gcyc/$COMPONENT"
export COMIN_ANL="$ROTDIR/$CDUMP.$PDY/$cyc/$COMPONENT"
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc/$COMPONENT"
export COMIN_GES=$COMIN_GES_ENS
export COMOUT="$ROTDIR/enkf$CDUMP.$PDY/$cyc"
export COMOUT="$ROTDIR/enkf$CDUMP.$PDY/$cyc/$COMPONENT"


export ATMGES_ENSMEAN="$COMIN_GES_ENS/${GPREFIX}atmf006$GSUFFIX"
Expand Down
6 changes: 3 additions & 3 deletions jobs/JGLOBAL_ENKF_UPDATE
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Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,7 @@ export pgmerr=errfile
##############################################
export CDATE=${CDATE:-${PDY}${cyc}}
export CDUMP=${CDUMP:-${RUN:-"gdas"}}
export COMPONENT=${COMPONENT:-atmos}
if [ $RUN_ENVIR = "nco" ]; then
export ROTDIR=${COMROOT:?}/$NET/$envir
fi
Expand All @@ -77,9 +78,8 @@ export GSUFFIX=${GSUFFIX:-$SUFFIX}


# COMIN_GES_ENS and COMOUT_ANL_ENS are used in exglobal script
# TO DO: Map NCO's directory into these variables
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc"
export COMOUT_ANL_ENS="$ROTDIR/enkf$CDUMP.$PDY/$cyc"
export COMIN_GES_ENS="$ROTDIR/enkfgdas.$gPDY/$gcyc/$COMPONENT"
export COMOUT_ANL_ENS="$ROTDIR/enkf$CDUMP.$PDY/$cyc/$COMPONENT"


###############################################################
Expand Down
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