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Merged
RussTreadon-NOAA merged 14 commits into from
Apr 15, 2025
Merged

Update JEDI hashes (20250414) #1615

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8cf2d69
Update to new stable build on 20250408
RussTreadon-NOAA Apr 8, 2025
07e7fce
Merge branch 'develop' into feature/stable-nightly
RussTreadon-NOAA Apr 9, 2025
9612186
Update to new stable build on 20250409
RussTreadon-NOAA Apr 9, 2025
92e8247
Merge branch 'develop' into feature/stable-nightly
RussTreadon-NOAA Apr 10, 2025
89209b4
Update to new stable build on 20250410
RussTreadon-NOAA Apr 10, 2025
8f17e92
Merge branch 'develop' into feature/stable-nightly
RussTreadon-NOAA Apr 11, 2025
4b929e6
Update to new stable build on 20250411
RussTreadon-NOAA Apr 11, 2025
ce51a6b
Merge branch 'develop' into feature/stable-nightly
RussTreadon-NOAA Apr 12, 2025
2e15f46
Update to new stable build on 20250412
RussTreadon-NOAA Apr 12, 2025
e4994fd
update path to g-w ci yamls
RussTreadon-NOAA Apr 14, 2025
d545e0c
update path to g-w ci platforms directory
RussTreadon-NOAA Apr 14, 2025
646774a
update path to g-w workflow
RussTreadon-NOAA Apr 14, 2025
a8b28cd
update path to g-w setup_expt.py for atm g-w ctests
RussTreadon-NOAA Apr 14, 2025
8d65c62
Merge branch 'develop' into feature/stable-nightly
RussTreadon-NOAA Apr 14, 2025
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2 changes: 1 addition & 1 deletion sorc/iodaconv
Open in desktop
Submodule iodaconv updated 6 files
+11 −0 test/CMakeLists.txt
+2 −2 test/testinput/acftbias_converter.yaml
+146 −0 test/testinput/bufr_gpsztd.yaml
+3 −0 test/testoutput/20240806T00Z_PT1M_ztd_gnssgb_ncep.nc
+2 −2 test/testoutput/acft_out.nc4
+2 −2 test/testoutput/varbc/acft_out.nc4
2 changes: 1 addition & 1 deletion sorc/oops
Open in desktop
Submodule oops updated 15 files
+9 −1 l95/src/lorenz95/FieldL95.cc
+1 −0 l95/src/lorenz95/FieldL95.h
+4 −0 l95/src/lorenz95/IncrementL95.cc
+1 −0 l95/src/lorenz95/IncrementL95.h
+9 −0 qg/model/FieldsQG.cc
+1 −0 qg/model/FieldsQG.h
+4 −0 qg/model/IncrementQG.cc
+1 −0 qg/model/IncrementQG.h
+1 −2 src/oops/base/HybridCovariance.h
+1 −1 src/oops/base/Increment.h
+1 −2 src/oops/base/IncrementSet.h
+1 −2 src/oops/base/StateEnsemble.h
+10 −0 src/oops/coupled/IncrementCoupled.h
+12 −0 src/oops/interface/Increment.h
+43 −0 src/test/interface/Increment.h
2 changes: 1 addition & 1 deletion sorc/saber
Open in desktop
Submodule saber updated 2 files
+5 −0 src/saber/bump/type_linop.fypp
+1 −1 src/saber/oops/Localization.h
2 changes: 1 addition & 1 deletion sorc/soca
Open in desktop
Submodule soca updated 18 files
+0 −1 CMakeLists.txt
+1 −3 RELEASE_NOTES.md
+0 −37 tutorial/CMakeLists.txt
+0 −117 tutorial/README.md
+0 −202 tutorial/config/3dvar.yaml
+0 −6 tutorial/config/gridgen.yaml
+0 −92 tutorial/config/pert_ic.yaml
+0 −37 tutorial/config/staticb.yaml
+0 −93 tutorial/config/synthetic_obs.yaml
+0 −37 tutorial/tutorial_3dvar.sh
+0 −101 tutorial/tutorial_3dvarfgat.sh
+0 −32 tutorial/tutorial_bump_op.sh
+0 −29 tutorial/tutorial_gridgen.sh
+0 −44 tutorial/tutorial_make_observations.sh
+0 −36 tutorial/tutorial_perturb_ic.sh
+0 −186 tutorial/tutorial_plot.py
+0 −133 tutorial/tutorial_synthetic_observations.py
+0 −385 tutorial/tutorial_tools.sh
2 changes: 1 addition & 1 deletion sorc/ufo
Open in desktop
Submodule ufo updated 20 files
+3 −2 src/ufo/ObsBias.cc
+90 −43 src/ufo/ObsBiasCovariance.cc
+9 −0 src/ufo/ObsBiasCovariance.h
+51 −9 src/ufo/filters/obsfunctions/ObsErrorFactorPressureCheck.cc
+20 −12 src/ufo/operators/crtm/ufo_crtm_utils_mod.F90
+2 −0 src/ufo/operators/sfccorrected/CMakeLists.txt
+141 −0 src/ufo/operators/sfccorrected/EvalSurfacePressure.cc
+46 −0 src/ufo/operators/sfccorrected/EvalSurfacePressure.h
+1 −0 src/ufo/operators/sfccorrected/ObsSfcCorrected.cc
+2 −0 src/ufo/utils/CMakeLists.txt
+9 −13 src/ufo/utils/SaveBiasCoeffs.cc
+10 −10 src/ufo/utils/SaveBiasCoeffs.h
+103 −0 src/ufo/utils/SaveBiasCovariance.cc
+33 −0 src/ufo/utils/SaveBiasCovariance.h
+10 −0 test/testinput/unit_tests/filters/obsfunctions/CMakeLists.txt
+39 −0 test/testinput/unit_tests/filters/obsfunctions/function_obserrorfactorpressurecheck.yaml
+10 −0 test/testinput/unit_tests/operators/CMakeLists.txt
+51 −0 test/testinput/unit_tests/operators/sfc_pressure_corrected.yaml
+1 −0 test/testinput/unit_tests/operators/sfcpcorrected.yaml
+1 −0 test/testinput/unit_tests/predictors/bias_coeff_cov_byrecord.yaml
2 changes: 1 addition & 1 deletion sorc/vader
Open in desktop
Submodule vader updated 10 files
+0 −2 src/CMakeLists.txt
+0 −72 src/vader/recipe.cc
+0 −53 src/vader/recipe.h
+0 −1 src/vader/recipes/AirDensityLevelsMinusOne.h
+0 −9 src/vader/recipes/AirDensityLevelsMinusOne_A.cc
+1 −0 src/vader/recipes/DryAirDensity.h
+5 −0 src/vader/recipes/DryAirDensity_A.cc
+1 −0 src/vader/recipes/RelativeHumidity.h
+7 −1 src/vader/recipes/RelativeHumidity_A.cc
+15 −6 test/vader/Recipe.h
2 changes: 1 addition & 1 deletion test/atm/global-workflow/setup_workflow_exp.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,7 @@ sed -i -e "s~@dumpdir@~${GDASAPP_TESTDATA}/lowres~g" config.yaml

# run the script
echo "Running global-workflow experiment generation script"
$srcdir/../../workflow/setup_expt.py gfs cycled --idate $idate \
$srcdir/../../dev/workflow/setup_expt.py gfs cycled --idate $idate \
--edate $edate \
--app $app \
--start $starttype \
Expand Down
12 changes: 6 additions & 6 deletions test/gw-ci/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -257,7 +257,7 @@ if (WORKFLOW_TESTS)
# GSI Atm DA C96/C48
# ------------------
set(pslot "C96C48_hybatmDA")
set(YAML_PATH ${HOMEgfs}/ci/cases/pr/${pslot}.yaml)
set(YAML_PATH ${HOMEgfs}/dev/ci/cases/pr/${pslot}.yaml)
set(HALF_CYCLE_TASKS
"gdas_stage_ic"
"gdas_fcst"
Expand Down Expand Up @@ -287,7 +287,7 @@ if (WORKFLOW_TESTS)
# -------------------
if(${TEST_GFS18})
set(pslot "C96C48_ufs_hybatmDA")
set(YAML_PATH ${HOMEgfs}/ci/cases/pr/${pslot}.yaml)
set(YAML_PATH ${HOMEgfs}/dev/ci/cases/pr/${pslot}.yaml)
set(HALF_CYCLE_TASKS
"gdas_stage_ic"
"gdas_fcst"
Expand Down Expand Up @@ -321,7 +321,7 @@ if (WORKFLOW_TESTS)
# ----------------
if(${TEST_AERO_LAND})
set(pslot "C96C48_hybatmaerosnowDA")
set(YAML_PATH ${HOMEgfs}/ci/cases/pr/${pslot}.yaml)
set(YAML_PATH ${HOMEgfs}/dev/ci/cases/pr/${pslot}.yaml)
set(HALF_CYCLE_TASKS
"gdas_stage_ic"
"gdas_fcst"
Expand Down Expand Up @@ -356,7 +356,7 @@ if (WORKFLOW_TESTS)
# GSI Atm DA C48, JEDI Marine DA 500
# ----------------------------------
set(pslot "C48mx500_3DVarAOWCDA")
set(YAML_PATH ${HOMEgfs}/ci/cases/pr/${pslot}.yaml)
set(YAML_PATH ${HOMEgfs}/dev/ci/cases/pr/${pslot}.yaml)
set(HALF_CYCLE_TASKS
"gdas_stage_ic"
"gdas_waveinit"
Expand All @@ -382,7 +382,7 @@ if (WORKFLOW_TESTS)
# -------------
set(pslot "C48mx500_hybAOWCDA")
set(letkf TRUE)
set(YAML_PATH ${HOMEgfs}/ci/cases/pr/${pslot}.yaml)
set(YAML_PATH ${HOMEgfs}/dev/ci/cases/pr/${pslot}.yaml)
set(HALF_CYCLE_TASKS
"gdas_stage_ic"
"gdas_fcst"
Expand All @@ -406,7 +406,7 @@ if (WORKFLOW_TESTS)
# -----------------------
if(TEST_GFS17)
set(pslot "C384mx025_3DVarAOWCDA")
set(YAML_PATH ${HOMEgfs}/ci/cases/gfsv17/${pslot}.yaml)
set(YAML_PATH ${HOMEgfs}/dev/ci/cases/gfsv17/${pslot}.yaml)
set(HALF_CYCLE_TASKS
"gdas_stage_ic"
"gdas_fcst")
Expand Down
6 changes: 3 additions & 3 deletions test/gw-ci/create_exp.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ exp_path=$4

# Get ICSDIR_ROOT
source "${HOMEgfs}/ush/detect_machine.sh"
source "${HOMEgfs}/ci/platforms/config.${MACHINE_ID}"
source "${HOMEgfs}/dev/ci/platforms/config.${MACHINE_ID}"

# Arguments for the exp setup
expyaml=${expyaml_ctest}
Expand All @@ -18,7 +18,7 @@ if [[ $MACHINE_ID = wcoss2 ]]; then
fi

# Source the gw environement
source ${HOMEgfs}/workflow/gw_setup.sh
source ${HOMEgfs}/dev/workflow/gw_setup.sh

# Create the experiment
${HOMEgfs}/workflow/create_experiment.py --yaml ${expyaml} --overwrite --force
${HOMEgfs}/dev/workflow/create_experiment.py --yaml ${expyaml} --overwrite --force