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add incr-update with IAU #129

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Merged
guillaumevernieres merged 5 commits into from
Sep 20, 2022
Merged

add incr-update with IAU #129

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01f5aea
add incr-update with IAU
hyunchul386 Sep 13, 2022
b840cff
update PR#129
hyunchul386 Sep 14, 2022
9b0c307
pointing total increments
hyunchul386 Sep 14, 2022
b7ffd54
pointing full increments with cleaning
hyunchul386 Sep 14, 2022
0d9891a
cleaning comments
hyunchul386 Sep 14, 2022
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29 changes: 29 additions & 0 deletions scripts/exgdas_global_marine_analysis_run.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -30,6 +30,29 @@ pwd=$(pwd)
# Utilities
export NLN=${NLN:-"/bin/ln -sf"}

function socaincr2mom6 {
incr=$1
bkg=$2
grid=$3
incr_out=$4

scratch=scratch_socaincr2mom6
mkdir -p $scratch
cd $scratch

echo "at socaincr2mom6" $bkg $grid

cp $incr inc.nc # TODO: use accumulated incremnet, not outerloop intermediates

@guillaumevernieres guillaumevernieres Sep 14, 2022

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remove comment once you point to the total increment.

@hyunchul386 hyunchul386 Sep 14, 2022

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updated

@guillaumevernieres guillaumevernieres Sep 14, 2022

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doesn't look like it, I still see # TODO: use accumulated incremnet, not outerloop intermediates ... which presumably was done

ncks -A -C -v h $bkg inc.nc # Replace h incrememnt (all 0's) by h background (expected by MOM)
ncrename -d zaxis_1,Layer inc.nc # Rename zaxis_1 to Layer
ncks -A -C -v Layer $bkg inc.nc # Replace dimension-less Layer with dimensional Layer
mv inc.nc inc_tmp.nc # ... dummy copy
ncwa -O -a Time inc_tmp.nc inc.nc # Remove degenerate Time dimension
ncks -A -C -v lon $grid inc.nc # Add longitude
ncks -A -C -v lat $grid inc.nc # Add latitude
mv inc.nc $incr_out
}

function bump_vars()
{
tmp=$(ls -d ${1}_* )
Expand Down Expand Up @@ -108,6 +131,12 @@ concatenate_bump 'bump3d'
clean_yaml var.yaml
$APRUN_SOCAANAL $JEDI_BIN/soca_var.x var.yaml 2>var.err


# increments update for MOM6
( socaincr2mom6 `ls -t ${DATA}/Data/ocn.*3dvar*.incr* | head -1` ${DATA}/INPUT/MOM.res.nc ${DATA}/soca_gridspec.nc ${DATA}/Data/inc.nc )
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################################################################################
set +x
if [ $VERBOSE = "YES" ]; then
Expand Down
1 change: 1 addition & 0 deletions test/soca/runtime_vars.sh
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Expand Up @@ -47,3 +47,4 @@ export R2D2_OBS_SRC=gdasapp
export R2D2_OBS_WINDOW=24 # R2D2 sampling DB window

export APRUN_SOCAANAL="$MPIEXEC_EXEC $MPIEXEC_NPROC 6"

1 change: 1 addition & 0 deletions test/soca/test_run.sh
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Expand Up @@ -25,3 +25,4 @@ test_file ${project_binary_dir}/test/soca/3dvar/analysis/Data/ocn.3dvarfgat_pse
test_file ${project_binary_dir}/test/soca/3dvar/analysis/Data/ocn.3dvarfgat_pseudo.an.2018-04-15T09:00:00Z.nc
test_file ${project_binary_dir}/test/soca/3dvar/analysis/Data/ocn.3dvarfgat_pseudo.an.2018-04-15T12:00:00Z.nc
test_file ${project_binary_dir}/test/soca/3dvar/analysis/Data/ocn.3dvarfgat_pseudo.an.2018-04-15T15:00:00Z.nc
test_file ${project_binary_dir}/test/soca/3dvar/analysis/Data/inc.nc