dtc/develop: run CCPP prebuild step from cmake

[climbfuji]

This PR

• Updates the submodule pointer for ccpp/physics to fix the broken dtc/develop branch (following PR Reinstate gwd interstitial reorg #141 which didn't update the submodule pointer).
• Runs ccpp_prebuild.py as part of the cmake step for both the dynamic and static CCPP. For the static build, a list of all suites is generated from the suites directory and compiled into the executable.

This code was tested successfully on

• hera+intel in "Release" mode
• cheyenne+gnu in "Release" mode
• macos+clang/gfortran in "Release" mode (build/compile only)
  for both dynamic and static CCPP.

Warning The SCM code is currently broken in "Debug" mode:

• For the Intel compiler, the compilation step fails because of mismatching arguments in ugwp_driver_v0.F (see known issue address gfortran compilation warning for ugwp_driver_v0.F ccpp-physics#354).
• For the GNU compiler, the runs segfault in sfc_nst.f, line 384. See the comment below for the full stacktrace.
• on macos+clang/gfortran, the code crashes in both "Release" and "Debug" mode with Segmentation fault - invalid memory reference right at the beginning.

This PR is not addressing these issues.

[climbfuji]

Full stacktrace of segmentation fault on cheyenne+gnu in "Debug" mode:
Running without gdb:

    Opened co2 data file: co2historicaldata_1992.txt
        1992  MONTHLY CO2 (PPMV)   24  12  LON/LAT (N-S/0-360E) IN 15 DEGREE RESOLUTION,  GLB ANNUAL MEAN =   356.35000000000002        GROWTH RATE =  0.57999999999999996
    Global annual mean CO2 data for year        1992   3.5635000000000002E-004
  CHECK: Sample of selected months of CO2 data used for year:        1992
         Month =           1
   3.6260999999999997E-004   3.5968999999999997E-004   3.6257999999999999E-004   3.5789999999999997E-004   3.5789999999999997E-004   3.5550999999999996E-004   3.5431999999999998E-004   3.5431999999999998E-004   3.5404000000000002E-004   3.5346999999999999E-004   3.5346999999999999E-004   3.5346999999999999E-004
         Month =           4
   3.6410000000000001E-004   3.6251999999999996E-004   3.5938999999999996E-004   3.6019999999999997E-004   3.6019999999999997E-004   3.5648000000000000E-004   3.5461999999999999E-004   3.5461999999999999E-004   3.5422000000000003E-004   3.5342000000000001E-004   3.5342000000000001E-004   3.5342000000000001E-004
         Month =           7
   3.5416000000000001E-004   3.5274999999999998E-004   3.5932000000000000E-004   3.5147999999999999E-004   3.5147999999999999E-004   3.5461999999999999E-004   3.5618999999999999E-004   3.5618999999999999E-004   3.5570999999999997E-004   3.5475999999999997E-004   3.5475999999999997E-004   3.5475999999999997E-004
         Month =          10
   3.5304999999999999E-004   3.5244999999999997E-004   3.6151000000000000E-004   3.5500999999999995E-004   3.5500999999999995E-004   3.5562000000000001E-004   3.5592000000000002E-004   3.5592000000000002E-004   3.5570999999999997E-004   3.5527999999999997E-004   3.5527999999999997E-004   3.5527999999999997E-004

Program received signal SIGFPE: Floating-point exception - erroneous arithmetic operation.

Backtrace for this error:
#0  0x7f1e250bc94f in ???
#1  0xf20334 in __sfc_nst_MOD_sfc_nst_run
	at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/ccpp/physics/physics/sfc_nst.f:384
#2  0xb4b9c6 in __ccpp_scm_gfs_v15plus_physics_cap_MOD_scm_gfs_v15plus_physics_run_cap
	at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/ccpp/physics/physics/ccpp_SCM_GFS_v15plus_physics_cap.F90:622
#3  0xb0d86e in __ccpp_scm_gfs_v15plus_cap_MOD_scm_gfs_v15plus_run_cap
	at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/ccpp/physics/physics/ccpp_SCM_GFS_v15plus_cap.F90:117
#4  0x53e35f in __ccpp_static_api_MOD_ccpp_physics_run
	at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/scm/src/ccpp_static_api.F90:698
#5  0x4bd501 in __gmtb_scm_time_integration_MOD_do_time_step
	at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/scm/src/gmtb_scm_time_integration.f90:88
#6  0x40d94e in __gmtb_scm_main_MOD_gmtb_scm_main_sub
	at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/scm/src/gmtb_scm.F90:197
#7  0x424293 in gmtb_scm
	at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/scm/src/gmtb_scm.F90:360
#8  0x4242df in main
	at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/scm/src/gmtb_scm.F90:359

Running in gdb:

Program received signal SIGFPE, Arithmetic exception.
0x0000000000f20334 in sfc_nst::sfc_nst_run (im=1, hvap=2500000, cp=1004.6, hfus=333580, jcal=4.1855000000000002, eps=0.62199349945828819, epsm1=-0.37800650054171181, rvrdm1=0.60773384427800026,
    rd=287.05000000000001, rhw0=1022, pi=3.1415926535897931, sbc=5.6704000000000003e-08, ps=..., u1=..., v1=..., t1=..., q1=..., tref=..., cm=..., ch=..., prsl1=..., prslki=..., prsik1=...,
    prslk1=..., wet=..., xlon=..., sinlat=..., stress=..., sfcemis=..., dlwflx=..., sfcnsw=..., rain=..., timestep=600, kdt=1, solhr=0, xcosz=..., wind=..., flag_iter=..., flag_guess=...,
    nstf_name1=2, nstf_name4=0, nstf_name5=5, lprnt=.FALSE., ipr=1, tskin=..., tsurf=..., xt=..., xs=..., xu=..., xv=..., xz=..., zm=..., xtts=..., xzts=..., dt_cool=..., z_c=..., c_0=..., c_d=...,
    w_0=..., w_d=..., d_conv=..., ifd=..., qrain=..., qsurf=..., gflux=..., cmm=..., chh=..., evap=..., hflx=..., ep=..., errmsg=..., errflg=0, _errmsg=512)
    at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/ccpp/physics/physics/sfc_nst.f:384
384	          hl_ts  = rch(i)*elocp*eps*hvap*qss(i)/(rd*t12)
(gdb) bt
#0  0x0000000000f20334 in sfc_nst::sfc_nst_run (im=1, hvap=2500000, cp=1004.6, hfus=333580, jcal=4.1855000000000002, eps=0.62199349945828819, epsm1=-0.37800650054171181, rvrdm1=0.60773384427800026,
    rd=287.05000000000001, rhw0=1022, pi=3.1415926535897931, sbc=5.6704000000000003e-08, ps=..., u1=..., v1=..., t1=..., q1=..., tref=..., cm=..., ch=..., prsl1=..., prslki=..., prsik1=...,
    prslk1=..., wet=..., xlon=..., sinlat=..., stress=..., sfcemis=..., dlwflx=..., sfcnsw=..., rain=..., timestep=600, kdt=1, solhr=0, xcosz=..., wind=..., flag_iter=..., flag_guess=...,
    nstf_name1=2, nstf_name4=0, nstf_name5=5, lprnt=.FALSE., ipr=1, tskin=..., tsurf=..., xt=..., xs=..., xu=..., xv=..., xz=..., zm=..., xtts=..., xzts=..., dt_cool=..., z_c=..., c_0=..., c_d=...,
    w_0=..., w_d=..., d_conv=..., ifd=..., qrain=..., qsurf=..., gflux=..., cmm=..., chh=..., evap=..., hflx=..., ep=..., errmsg=..., errflg=0, _errmsg=512)
    at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/ccpp/physics/physics/sfc_nst.f:384
#1  0x0000000000b4b9c7 in ccpp_scm_gfs_v15plus_physics_cap::scm_gfs_v15plus_physics_run_cap (con_t0c=273.14999999999998, con_rd=287.05000000000001, rlapse=0.0064999999999999997, con_hvap=2500000,
    con_eps=0.62199349945828819, con_g=9.8066499999999994, con_pi=3.1415926535897931, con_sbc=5.6704000000000003e-08, con_epsm1=-0.37800650054171181, huge=9.969209968386869e+36, con_hfus=333580,
    physics=..., con_cp=1004.6, cdata=..., cimin=0.14999999999999999, con_tice=271.19999999999999, con_cvap=1846, con_rv=461.5, con_jcal=4.1855000000000002, con_fvirt=0.60773384427800026,
    con_cliq=4185.5, con_rhw0=1022) at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/ccpp/physics/physics/ccpp_SCM_GFS_v15plus_physics_cap.F90:622
#2  0x0000000000b0d86f in ccpp_scm_gfs_v15plus_cap::scm_gfs_v15plus_run_cap (con_sbc=5.6704000000000003e-08, con_cliq=4185.5, con_rd=287.05000000000001, ltp=0, rlapse=0.0064999999999999997,
    con_hvap=2500000, con_eps=0.62199349945828819, con_g=9.8066499999999994, con_t0c=273.14999999999998, con_pi=3.1415926535897931, cimin=0.14999999999999999, con_epsm1=-0.37800650054171181,
    huge=9.969209968386869e+36, con_hfus=333580, physics=..., con_cp=1004.6, cdata=..., con_cvap=1846, con_rv=461.5, con_jcal=4.1855000000000002, con_fvirt=0.60773384427800026,
    con_tice=271.19999999999999, con_rhw0=1022) at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/ccpp/physics/physics/ccpp_SCM_GFS_v15plus_cap.F90:117
#3  0x000000000053e360 in ccpp_static_api::ccpp_physics_run (cdata=..., suite_name=..., group_name=..., ierr=0, _suite_name=15, _group_name=0)
    at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/scm/src/ccpp_static_api.F90:698
#4  0x00000000004bd502 in gmtb_scm_time_integration::do_time_step (scm_state=..., cdata_cols=...)
    at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/scm/src/gmtb_scm_time_integration.f90:88
#5  0x000000000040d94f in gmtb_scm_main::gmtb_scm_main_sub () at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/scm/src/gmtb_scm.F90:197
#6  0x0000000000424294 in gmtb_scm () at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/scm/src/gmtb_scm.F90:360
#7  0x00000000004242e0 in main (argc=1, argv=0x7fffffffbfa4) at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/scm/src/gmtb_scm.F90:359
#8  0x00007fffec2276e5 in __libc_start_main () from /glade/u/apps/ch/os/lib64/libc.so.6
#9  0x0000000000405bf9 in _start () at ../sysdeps/x86_64/start.S:118
(gdb) bt full
#0  0x0000000000f20334 in sfc_nst::sfc_nst_run (im=1, hvap=2500000, cp=1004.6, hfus=333580, jcal=4.1855000000000002, eps=0.62199349945828819, epsm1=-0.37800650054171181, rvrdm1=0.60773384427800026,
    rd=287.05000000000001, rhw0=1022, pi=3.1415926535897931, sbc=5.6704000000000003e-08, ps=..., u1=..., v1=..., t1=..., q1=..., tref=..., cm=..., ch=..., prsl1=..., prslki=..., prsik1=...,
    prslk1=..., wet=..., xlon=..., sinlat=..., stress=..., sfcemis=..., dlwflx=..., sfcnsw=..., rain=..., timestep=600, kdt=1, solhr=0, xcosz=..., wind=..., flag_iter=..., flag_guess=...,
    nstf_name1=2, nstf_name4=0, nstf_name5=5, lprnt=.FALSE., ipr=1, tskin=..., tsurf=..., xt=..., xs=..., xu=..., xv=..., xz=..., zm=..., xtts=..., xzts=..., dt_cool=..., z_c=..., c_0=..., c_d=...,
    w_0=..., w_d=..., d_conv=..., ifd=..., qrain=..., qsurf=..., gflux=..., cmm=..., chh=..., evap=..., hflx=..., ep=..., errmsg=..., errflg=0, _errmsg=512)
    at /glade/work/heinzell/scm/gmtb-scm-call-ccpp-prebuild-from-cmake/gnu/static/ccpp/physics/physics/sfc_nst.f:384
        alfac = 0.99434920748239553
        alon = -25
        alpha = 0.017282530986094571
        beta = -0.0032995932975481827
        cosa = nan(0x8000000000000)
        cpinv = 0.00099542106310969544
        dt_cool_old = (nan(0x8000000000000))
        dta = nan(0x8000000000000)
        dtmp = 2.0690163888252816e-05
        dtz = nan(0x8000000000000)
        dwat = 2.3718608390787014e-05
        dz = nan(0x8000000000000)
        elocp = 2488.5526577742385
        f_nsol = -527.820457937215
        fc = nan(0x8000000000000)
        flag = (.TRUE.)
        fw = nan(0x8000000000000)
        grav = 9.7803316893237469
        hl_ts = nan(0x8000000000000)
        hs_ts = 0.63163271943555399
        hvapi = 3.9999999999999998e-07
        i = 1
        ifd_old = (nan(0x8000000000000))
        le = 2501000
        nswsfc = (0)
        q0 = (0.010199999436736107)
        q_ts = nan(0x8000000000000)
        q_warm = nan(0x8000000000000)
        qss = (3.0930747287064577e-08)
        rch = (0.63163271943555399)
        rf_ts = nan(0x8000000000000)
        rho_a = (1.2246409913361593)
        rho_w = -16095.284837717774
        rich = nan(0x8000000000000)
        rnl_ts = 0
        sep = 1.3541813962157574e-08
        sina = nan(0x8000000000000)
        soltim = -6000
        sss = 34
        sstc = nan(0x8000000000000)
        t0 = nan(0x8000000000000)
        t12 = 0
        taux = nan(0x8000000000000)
        tauy = nan(0x8000000000000)
        tem = nan(0x8000000000000)
        theta1 = (290.36036381138433)
        tsea = 0
        tskin_old = (nan(0x8000000000000))
        ttop = nan(0x8000000000000)
        ttop0 = nan(0x8000000000000)
        tv1 = (291.93756531568721)
        ulwflx = (0)
        ustar_a = 0.063606526712090397
        wetc = 1.9912447219968663e-06
        wndmag = (10.087927732514036)
        xs_old = (nan(0x8000000000000))
        xt_old = (nan(0x8000000000000))
        xtts_old = (nan(0x8000000000000))
        xu_old = (nan(0x8000000000000))
        xv_old = (nan(0x8000000000000))
        xz_old = (nan(0x8000000000000))
        xzts_old = (nan(0x8000000000000))
        z_c_old = (nan(0x8000000000000))
        zm_old = (nan(0x8000000000000))
        zsea1 = 0
        zsea2 = 0.0050000000000000001

[grantfirl]

Thanks for delving into cmake and implementing this. I'll update the docs to reflect this change.

[grantfirl]

DEBUG mode issue will be addressed in a PR later.

[grantfirl]

@climbfuji When trying to run this on Hera, cmake is sending up a bunch of errors for me. It seems the default version of cmake on Hera doesn't like a few of the commands. It is easy to just add a statement in the Hera setup script to load a newer version of cmake, and I'll do that, but do you have any idea what we should change the CMAKE_MINIMUM_REQUIRED variable to handle the new commands?