Updated terms text.

tornado/static/downloadData.html

@@ -6,28 +6,82 @@
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     <h2>SweFreq Agreement</h2>
-    <h3>Terms of use</h3>
+    <h3>Terms of use for the SweGen dataset (release 20161019)</h3>
 
-    <p>You are allowed to freely search the data available at this site, and files with genome-wide variant frequencies
-    are available for academic use upon registration. The variant frequency files, or modified versions of the files, may
-    not be redistributed to other users. Each user is required to register in the system and download his/her own copy
-    from this central site and it responsible that this information is not distributed to others. We encourage the use
-    and publication of frequency data for specific targeted sets of variants (for instance, assessing a set of candidate
-    causal variants observed in a collection of rare disease patients). However, you are not allowed to publish global
-    (genome-wide) analyses of the complete data set or large gene sets, until after the first SweGen paper, describing
-    the resource, has been published in a peer-reviewed journal (estimated to be in early 2017).
+    <!-- Apart from the links and markup, VERBATIM OF TERMS AND AGREEMENT
+         IN THE FILE terms_of_use.txt IN TOP-LEVEL OF REPO -->
+
+    <p>
+        All data in the SweGen dataset are human allele frequencies estimated
+        from aggregates across large sample groups, rendering contributing
+        individuals non-identifiable.  The method used for estimating the
+        frequencies is described in the corresponding publication.  Data is
+        versioned and frequencies in different data versions may be different.
+        No individual level genetic data is contained in this dataset.  We
+        encourage the use and publication of frequency data for specific
+        targeted sets of variants (for instance, assessing a set of candidate
+        causal variants observed in a collection of rare disease patients).
+    </p>
+    <p>
+        By accessing the data you agree to the following terms and conditions,
+        irrespective of the method used to retrieve the data (for example vcf
+        file download or variant query through Beacon or other methods):
+    </p>
+    <ol>
+        <li>
+            You are allowed to freely search the data at the SweFreq website,
+            and download any files containing allele frequency data made
+            available on this site after registration.
+        </li>
+        <li>
+            The data may not be used to attempt to identify any individual in
+            this or other studies.
+        </li>
+        <li>
+            No global analysis of the data may be published before the SweGen
+            project's own upcoming publication, estimated early 2017.  A notice
+            will appear on <a href="https://swefreq.nbis.se">https://swefreq.nbis.se</a> stating when new global
+            analyses may be published.
+        </li>
+        <li>
+            Any published study that includes processing of the data
+            shall include the data version used, acknowledge the original
+            study with the sentence "The SweGen allele frequency data was
+            generated by Science for Life Laboratory", and cite the following
+            publication: SweGen: A whole-genome map of genetic variability in
+            a cross-section of the Swedish population.  Ameur et al., bioRxiv
+            081505; (doi:10.1101/081505)
+        </li>
+        <li>
+            The data may be redistributed in original or modified form, but must
+            always be distributed together with the file "terms_of_use.txt"
+            that is stored together with the data and available here
+            [<a href="https://swefreq.nbis.se/#/downloadData/">https://swefreq.nbis.se/#/downloadData/</a>], and any redistributed
+            data derived from the SweGen data set must follow those terms and
+            conditions.
+        </li>
+    </ol>
 
     <h3>Disclaimer</h3>
 
-    <p>This database is based on individuals from population-based cross-sectional studies. No phenotype information has
-    been used as inclusion criteria in the database. Individuals with common diseases occur at the general population
-    prevalence of the disease. As a consequence, genetic variants contributing to disease risk occur in the database at
-    the general population frequency. There is no explicit or implicit guarantee that the genetic variants in the
-    database do not contribute to risk of disease.
+    <p>
+        This dataset is based on individuals from population-based
+        cross-sectional studies.  No phenotype information has been used as
+        inclusion criteria in the dataset.  Individuals with common diseases
+        occur at the general population prevalence of the disease.  As a
+        consequence, genetic variants contributing to disease risk occur in
+        the dataset at the general population frequency.  There is no explicit
+        or implicit guarantee that the genetic variants in the dataset do not
+        contribute to risk of disease.
+    </p>
 
     <h3>Citation in publications</h3>
 
-    <p>Any use of SweGen data should be cited by <a href="http://somewhere.some.place/">our preprint on bioRxiv</a>.
+    <p>
+        Any use of SweGen data should be cited by our preprint on bioRxiv
+        [<a href="http://biorxiv.org/content/early/2016/10/17/081505">http://biorxiv.org/content/early/2016/10/17/081505</a>]
+    </p>
+
 
     <p><b>I hereby consent to the agreement:</b> <input type="checkbox"
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