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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 238 79

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 15

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    17 9

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 218 108

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 206 47

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 307 repositories
  • Sloppymerase Public

    Find single-stranded DNA breaks with an error-prone DNA polymerase

    NBISweden/Sloppymerase’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 17, 2025
  • bp-sweden-web Public

    Website for BigPicture Sweden

    NBISweden/bp-sweden-web’s past year of commit activity
    SCSS 0 MIT 0 1 2 Updated Jan 17, 2025
  • workshop-data-visualization-r Public

    Materials for NBIS workshop on data visulalization

    NBISweden/workshop-data-visualization-r’s past year of commit activity
    HTML 2 GPL-3.0 2 2 0 Updated Jan 17, 2025
  • sdafs Public

    FUSE file system driver for the sensitive data archive

    NBISweden/sdafs’s past year of commit activity
    Go 0 MIT 0 0 0 Updated Jan 17, 2025
  • Earth-Biogenome-Project-pilot Public

    Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

    NBISweden/Earth-Biogenome-Project-pilot’s past year of commit activity
    Nextflow 12 GPL-3.0 8 54 0 Updated Jan 16, 2025
  • teaching_literature_club Public

    NBIS' teaching literature club

    NBISweden/teaching_literature_club’s past year of commit activity
    Shell 0 GPL-3.0 1 0 0 Updated Jan 16, 2025
  • CMK-NBIS-PRT-project-template Public template

    NBIS peer review track project template

    NBISweden/CMK-NBIS-PRT-project-template’s past year of commit activity
    1 0 0 0 Updated Jan 16, 2025
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli’s past year of commit activity
    Go 5 AGPL-3.0 1 48 1 Updated Jan 15, 2025
  • PLUPP-sv-mock-server Public

    A mock server to improve development experience for SV apps

    NBISweden/PLUPP-sv-mock-server’s past year of commit activity
    JavaScript 1 0 0 0 Updated Jan 15, 2025
  • NanoSeq-fork Public Forked from fa8sanger/NanoSeq

    Analysis software for Nanorate Sequencing (NanoSeq) experiments

    NBISweden/NanoSeq-fork’s past year of commit activity
    C++ 0 AGPL-3.0 10 0 0 Updated Jan 15, 2025
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