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macos: fix missing pthread mutex init after calloc #21

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@sitano sitano commented Jul 31, 2024

calls constructor for a mutex in a struct value init-ed with gu_calloc.

in path gcs_core_create() -> gcs_group_init(), the first one allocates gcs_core_t* core with gu_calloc() whereas gcs_code_t has gcs_group_t group with gu::Mutex memb_mtx_. After memory allocation gu::Mutex constructor was not called that lead to an error on Darwin in a call to pthread mutex lock.

cherry-pick from #20.

Stacktraces from Darwin

Originally it failed on boot in:

[...libgalera_smm...]
    frame #0: 0x0000000104b3f0e0 libgalera_smm.so`gcs_open(conn=0x0000000154707500, channel="blah", url="gcomm://", bootstrap=true) at gcs.cpp:1643:10
    frame #1: 0x0000000104adac44 libgalera_smm.so`galera::Gcs::connect(this=0x000000015502a0e0, cluster_name="blah", cluster_url="gcomm://", bootstrap=true) at galera_gcs.hpp:115:20
    frame #2: 0x0000000104adaa44 libgalera_smm.so`galera::ReplicatorSMM::connect(this=0x0000000155029800, cluster_name="blah", cluster_url="gcomm://", state_donor="", bootstrap=true) at replicator_smm.cpp:356:21
  * frame #3: 0x0000000104a5ffc0 libgalera_smm.so`galera_connect(gh=0x00000001446040c0, cluster_name="blah", cluster_url="gcomm://", state_donor="", bootstrap=true) at wsrep_provider.cpp:203:22
[...mariadbd+wsrep border...]
    frame #4: 0x00000001012c7be0 mariadbd`wsrep::wsrep_provider_v26::connect(this=0x00006000038fc0c0, cluster_name="blah", cluster_url="gcomm://", state_donor="", bootstrap=true) at wsrep_provider_v26.cpp:818:29
    frame #5: 0x00000001012a0890 mariadbd`wsrep::server_state::connect(this=0x0000000154608730, cluster_name="blah", cluster_address="gcomm://", state_donor="", bootstrap=true) at server_state.cpp:525:23
    frame #6: 0x0000000100b856b4 mariadbd`wsrep_start_replication(wsrep_cluster_address="gcomm://") at wsrep_mysqld.cc:1207:46
    frame #7: 0x0000000100b85280 mariadbd`wsrep_init_startup(sst_first=true) at wsrep_mysqld.cc:1012:8
    frame #8: 0x000000010036c3bc mariadbd`init_server_components() at mysqld.cc:5233:9
    frame #9: 0x0000000100368640 mariadbd`mysqld_main(argc=26, argv=0x00000001547057f0) at mysqld.cc:5970:7
    frame #10: 0x00000001000038c0 mariadbd`main(argc=5, argv=0x000000016fdff048) at main.cc:34:10
    frame #11: 0x00000001884ae0e0 dyld`start + 2360

where as init previously called from:

libgalera_smm.so`gcs_group_init(group=0x000000014d006f88, cnf=0x000000014d82ab10, cache=0x000000014d82af18, node_name="mariadb-primary-1", inc_addr="fe80:0", gcs_proto_ver='\x04', repl_proto_ver=11, appl_proto_ver=4) at gcs_group.cpp:64:27
    frame #1: 0x0000000104b37258 libgalera_smm.so`gcs_core_create(conf=0x000000014d82ab10, cache=0x000000014d82af18, node_name="mariadb-primary-1", inc_addr="fe80:0", repl_proto_ver=11, appl_proto_ver=4, gcs_proto_ver=4) at gcs_core.cpp:151:21
    frame #2: 0x0000000104b3e8ec libgalera_smm.so`gcs_create(conf=0x000000014d82ab10, gcache=0x000000014d82af18, progress_cb=0x000000014d82b2d0, node_name="mariadb-primary-1", inc_addr="fe80:0", repl_proto_ver=11, appl_proto_ver=4) at gcs.cpp:317:19
    frame #3: 0x0000000104af4f08 libgalera_smm.so`galera::Gcs::Gcs(this=0x000000014d82b2e0, config=0x000000014d82ab10, cache=0x000000014d82af18, cb=0x000000014d82b2d0, repl_proto_ver=11, appl_proto_ver=4, node_name="mariadb-primary-1", node_incoming="fe80:0") at galera_gcs.hpp:99:19
    frame #4: 0x0000000104ad9190 libgalera_smm.so`galera::Gcs::Gcs(this=0x000000014d82b2e0, config=0x000000014d82ab10, cache=0x000000014d82af18, cb=0x000000014d82b2d0, repl_proto_ver=11, appl_proto_ver=4, node_name="mariadb-primary-1", node_incoming="fe80:0") at galera_gcs.hpp:104:9
    frame #5: 0x0000000104ad7f4c libgalera_smm.so`galera::ReplicatorSMM::ReplicatorSMM(this=0x000000014d82aa00, args=0x000000016fdfbea8) at replicator_smm.cpp:129:5
    frame #6: 0x0000000104ad9a98 libgalera_smm.so`galera::ReplicatorSMM::ReplicatorSMM(this=0x000000014d82aa00, args=0x000000016fdfbea8) at replicator_smm.cpp:167:1
    frame #7: 0x0000000104a5f170 libgalera_smm.so`galera_init(gh=0x000000014bf08520, args=0x000000016fdfbea8) at wsrep_provider.cpp:50:23
    frame #8: 0x00000001012c664c mariadbd`wsrep::wsrep_provider_v26::wsrep_provider_v26(this=0x0000600001f440c0, server_state=0x000000014be04d90, provider_options="", provider_spec="libgalera_smm.so", services=0x00000001024b9478) at wsrep_provider_v26.cpp:783:9
    frame #9: 0x00000001012c7a80 mariadbd`wsrep::wsrep_provider_v26::wsrep_provider_v26(this=0x0000600001f440c0, server_state=0x000000014be04d90, provider_options="", provider_spec="libgalera_smm.so", services=0x00000001024b9478) at wsrep_provider_v26.cpp:747:1
    frame #10: 0x00000001012965a8 mariadbd`wsrep::provider::make_provider(server_state=0x000000014be04d90, provider_spec="libgalera_smm.so", provider_options="", services=0x00000001024b9478) at provider.cpp:37:20
    frame #11: 0x00000001012a06ac mariadbd`wsrep::server_state::load_provider(this=0x000000014be04d90, provider_spec="libgalera_smm.so", provider_options="", services=0x00000001024b9478) at server_state.cpp:505:17
    frame #12: 0x0000000100b84684 mariadbd`wsrep_init() at wsrep_mysqld.cc:907:38
    frame #13: 0x0000000100b851dc mariadbd`wsrep_init_startup(sst_first=true) at wsrep_mysqld.cc:988:7
    frame #14: 0x000000010036c3bc mariadbd`init_server_components() at mysqld.cc:5233:9
    frame #15: 0x0000000100368640 mariadbd`mysqld_main(argc=26, argv=0x000000014d0054f0) at mysqld.cc:5970:7
    frame #16: 0x00000001000038c0 mariadbd`main(argc=5, argv=0x000000016fdff048) at main.cc:34:10
    frame #17: 0x00000001884ae0e0 dyld`start + 2360

calls constructor for a mutex in a struct value init-ed with gu_calloc.

in path `gcs_core_create() -> gcs_group_init()`, the first one allocates
`gcs_core_t* core` with gu_calloc() whereas `gcs_code_t` has
`gcs_group_t group` with `gu::Mutex memb_mtx_`. After memory allocation
gu::Mutex constructor was not called that lead to an error on Darwin in
a call to pthread mutex lock.

Signed-off-by: Ivan Prisyazhnyy <[email protected]>
@sitano sitano force-pushed the ivan/fix_gcs_group_mutex_init branch from 67981b9 to ec7d79d Compare July 31, 2024 13:57
@grooverdan
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created MDEV-34717 to refer to this.

@@ -61,6 +61,7 @@ gcs_group_init (gcs_group_t* group, gu::Config* const cnf, gcache_t* const cache
int const appl_proto_ver)
{
// here we also create default node instance.
new (&group->memb_mtx_) gu::Mutex(NULL);
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This reminds me of the recent MDEV-34625 and MariaDB/server#3408. I understood that macOS would use a clang based compiler by default.

I think that use of placement new after a call to a calloc like operation may lead to surprises when using GCC 6 or later, if the constructor is expecting that some fields were already initialized by a previous write. GCC 6 and later could optimize away such pre-constructor writes, thanks to -flifetime-dse.

That macOS (as well as AIX) are not happy with zero initialization for pthread_mutex_t bit me in MariaDB/server#3433.

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This reminds me of the recent MDEV-34625 and MariaDB/server#3408. I understood that macOS would use a clang based compiler by default.

I think that use of placement new after a call to a calloc like operation may lead to surprises when using GCC 6 or later, if the constructor is expecting that some fields were already initialized by a previous write. GCC 6 and later could optimize away such pre-constructor writes, thanks to -flifetime-dse.

MacOS uses Clang yes. But MDEV-34625 IMHO is different. Moreover, the Godbolt example does not look correct - it is fine that the memset in https://gcc.godbolt.org/z/5n87z1raG is optimized out because it is expected (I suppose) that after a class constructor is called all class variables are initialized. Thus, the compiler may conclude that if we have void *buf = malloc(size S); s = new (buf) buf; is equivalent to S *s = new S;.

But it is different if you have malloc() buf size bigger than the memory that the constructor() is expected to touch:

https://gcc.godbolt.org/z/Y43YW7vKj

struct S {
  int i;     // uninitialized in consturctor
  S() {};
};

struct A {
    char a[256];
    S s;
};

int bar() {
  A *buf = (A *)malloc(sizeof(A));
  memset(buf, 0, sizeof(A));
  S* s = new(&buf->s) S;
  return s->i;
}

became call calloc in assembly or rep stosq. So memset is Not eliminated in this case and will not be eliminated in the case of gcs_core_t* core = GU_CALLOC (1, gcs_core_t); as far as sizeof(gcs_core_t) >> gcs_group_t.

it does not eliminate calloc() even if -flifetime-dse=0 (try saving *buf to external volatile var) (default is 2) (https://gcc.gnu.org/onlinedocs/gcc/Optimize-Options.html).

if you still think it is not safe, I can offer that we could replace the mutex there instead of gu::Mutex memb_mtx_ we could write gu_mutex_t mutable value_ and init without calling class constructors. WDYT?

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if the constructor is expecting that some fields were already initialized by a previous write.

I think its forbidden by the spec (speculating) - constructor must init all class fields

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Yes, it is UB, with no doubt. If all fields of gu::Mutex are initialized by the constructor, then there should be no issue with the GCC -flifetime-dse on any platform.

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from what we can see in gu_mutex.hpp they all are init-ed

namespace gu
{
    class Mutex
    {
    public:

        Mutex (const wsrep_mutex_key_t* key) : value_()
#ifdef GU_MUTEX_DEBUG
                 , owned_()
                 , locked_()
#endif /* GU_MUTEX_DEBUG */
        {
            if (gu_mutex_init (key, &value_))
                gu_throw_fatal;
        }

    protected:

        gu_mutex_t  mutable value_;
#ifdef GU_MUTEX_DEBUG
        gu_thread_t mutable owned_;
        bool        mutable locked_;
#endif /* GU_MUTEX_DEBUG */
    };
}

@janlindstrom
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This issue is currently worked by Alexey and his comment was "I'd rather make a constructor for group struct."

@sitano
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sitano commented Aug 8, 2024

@janlindstrom shall we close this PR then? Speaking of "I'd rather make a constructor for group struct." the less invasive thing could be just to replace the gu::Mutex memb_mtx_ with gu_mutex_t memb_mtx_; and calling if (gu_mutex_init (NULL, &memb_mtx_)) gu_throw_fatal; in place of new (&group->memb_mtx_) gu::Mutex(NULL); - much less invasive than refactoring init code into the constructor.

@janlindstrom
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@sitano Lets wait for Alexey's decision. Galera and MariaDB currently do not support officially MacOS so this is not very high-priority issue currently.

@ayurchen
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ayurchen commented Aug 15, 2024

@sitano This should be (I have no ways to test it on MacOS unfortunately) fixed in 5dc30e6 by introducing a proper constructor for struct gcs_group and struct gcs_core so that there is no calloc there. The mutex is initialized in initialization list - and destroyed accordingly.

@sitano
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sitano commented Aug 16, 2024

@ayurchen I would love to check it works on Mac in Monday but I don't know where to find this commit: 5dc30e6 (no such commit), its probably somewhere in non public repo?

@janlindstrom
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@sitano Try #23

@sitano
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sitano commented Aug 19, 2024

Sorry, I am a bit short on time. Hope I will do the trials tomorrow.

@sitano
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sitano commented Aug 22, 2024

tested 78f68e9 on MBP M3Max (23.5.0 Darwin Kernel Version 23.5.0: Wed May 1 20:17:33 PDT 2024; root:xnu-10063.121.3~5/RELEASE_ARM64_T6031 arm64) (/Library/Developer/CommandLineTools/SDKs/MacOSX14.4.sdk) built from https://github.com/sitano/galera/tree/ivan/galera-macos with

$ cmake .. -G Ninja -DCMAKE_C_COMPILER_LAUNCHER=sccache -DCMAKE_CXX_COMPILER_LAUNCHER=sccache -DCMAKE_BUILD_TYPE="Debug" -DCMAKE_INSTALL_PREFIX="install" -DWITH_DBUG_TRACE=OFF -DNOT_FOR_DISTRIBUTION=YES -DCMAKE_VERBOSE_MAKEFILE=ON -DMYSQL_MAINTAINER_MODE=OFF -DWITH_ZLIB=bundled -DWITH_PCRE=bundled -DOPENSSL_ROOT_DIR=$(brew --prefix)/opt/openssl@3
$ cmake --build . --parallel 16

works well!

I have managed to execute Galera node and join another node. (@janlindstrom, @ayurchen )

@sitano
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sitano commented Dec 16, 2024

how things are going with #21 (comment) ?

@sitano
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sitano commented Dec 16, 2024

@sitano
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sitano commented Dec 18, 2024

close this one as soon as #23 is closed per changes https://github.com/MariaDB/galera/blob/mariadb-4.x/gcs/src/gcs_core.cpp#L128 are already there. See #23 (comment).

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