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mikolmogorov authored Jul 10, 2023
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# Hapdup

HapDup (haplotype duplicator) is a pipeline to convert a haploid long read assembly into a diploid assembly.
HapDup works with either Oxford Nanopore or PacBio (HiFi or CLR). The reconstructed haplotypes preserve heterozygous
HapDup works with either Oxford Nanopore or PacBio HiFi. The reconstructed haplotypes preserve heterozygous
structural variants (in addition to small variants) and are locally phased.


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