flye update + 0.10

README.md

@@ -1,11 +1,11 @@
-# HapDup
+# Hapdup
 
 HapDup (haplotype duplicator) is a pipeline to convert a haploid long read assembly into a diploid assembly.
 HapDup works with either Oxford Nanopore or PacBio (HiFi or CLR). The reconstructed haplotypes preserve heterozygous 
 structural variants (in addition to small variants) and are locally phased.
 
 
-## Version 0.8
+## Version 0.10
 
 Input requirements
 ------------------
@@ -43,7 +43,7 @@ should be adjusted according to the available resources. For PacBio HiFi input,
 ```
 cd directory_with_assembly_and_alignment
 HD_DIR=`pwd`
-docker run -v $HD_DIR:$HD_DIR -u `id -u`:`id -g` mkolmogo/hapdup:0.8 \
+docker run -v $HD_DIR:$HD_DIR -u `id -u`:`id -g` mkolmogo/hapdup:0.10 \
   hapdup --assembly $HD_DIR/assembly.fasta --bam $HD_DIR/lr_mapping.bam --out-dir $HD_DIR/hapdup -t 64 --rtype ont
 ```
 
@@ -64,9 +64,9 @@ should be adjusted according to the available resources. For PacBio HiFi input,
 `--rtype hifi` instead of `--rtype ont`.
 
 ```
-singularity pull docker://mkolmogo/hapdup:0.8
+singularity pull docker://mkolmogo/hapdup:0.10
 HD_DIR=`pwd`
-singularity exec --bind $HD_DIR hapdup_0.8.sif \
+singularity exec --bind $HD_DIR hapdup_0.10.sif \
   hapdup --assembly $HD_DIR/assembly.fasta --bam $HD_DIR/lr_mapping.bam --out-dir $HD_DIR/hapdup -t 64 --rtype ont
 ```
 

hapdup/__version__.py

@@ -1 +1 @@
-__version__ = 0.8
+__version__ = 0.10