0.5

README.md

@@ -6,7 +6,7 @@ The reconstructed haplotypes preserve heterozygous structural variants (in addit
 are locally phased.
 
 
-## Version 0.4
+## Version 0.5
 
 Input requirements
 ------------------
@@ -44,7 +44,7 @@ should be adjusted according to the available resources. For PacBio HiFi input,
 ```
 cd directory_with_assembly_and_alignment
 HD_DIR=`pwd`
-docker run -v $HD_DIR:$HD_DIR -u `id -u`:`id -g` mkolmogo/hapdup:0.4 \
+docker run -v $HD_DIR:$HD_DIR -u `id -u`:`id -g` mkolmogo/hapdup:0.5 \
   hapdup --assembly $HD_DIR/assembly.fasta --bam $HD_DIR/lr_mapping.bam --out-dir $HD_DIR/hapdup -t 64 --rtype ont
 ```
 
@@ -65,9 +65,9 @@ should be adjusted according to the available resources. For PacBio HiFi input,
 `--rtype hifi` instead of `--rtype ont`.
 
 ```
-singularity pull docker://mkolmogo/hapdup:0.4
+singularity pull docker://mkolmogo/hapdup:0.5
 HD_DIR=`pwd`
-singularity exec --bind $HD_DIR hapdup_0.4.sif \
+singularity exec --bind $HD_DIR hapdup_0.5.sif \
   hapdup --assembly $HD_DIR/assembly.fasta --bam $HD_DIR/lr_mapping.bam --out-dir $HD_DIR/hapdup -t 64 --rtype ont
 ```