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77 Open 29 Closed
77 Open 29 Closed
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Issues list

Do .bam files of larger size require more memory for each thread?
#110 opened Feb 24, 2025 by BitterWood
mkdir code fails to use full path specified with -o option
#109 opened Jan 24, 2025 by buddej
Cell number from scTE were not consistent with cellranger
#108 opened Dec 17, 2024 by sixingchen718
No mitochondrial genes after the run
#107 opened Dec 4, 2024 by l1y1y
2
Error: X needs to be 2-dimensional, not 1-dimensional for bam file with more than 3000 cells
#106 opened Nov 21, 2024 by OwenHoare1989
3
Could you please check if there is an issue with my script? I’ve been running it for several days, but there are no results being output.
#105 opened Nov 14, 2024 by l1y1y
suggestions for installation
#104 opened Nov 14, 2024 by jennifer09meow
TypeError: unsupported operand type(s) for |: 'type' and 'type'
#103 opened Oct 21, 2024 by robertdubineinsteinmed
1
How to calculate TE align regions use scTE genome indices
#102 opened Oct 21, 2024 by synnimeng
TE names
#100 opened Aug 8, 2024 by juliaSid
The number of cells is not consistent with the result of cellranger
#96 opened Jun 10, 2024 by Yuanqingq
1
RNA-seq data processing
#94 opened May 25, 2024 by l1y1y
5
scTEATAC error
#93 opened May 22, 2024 by cyyisbest
Questions regarding preprocessing and integration of scTE with other tools
#92 opened May 13, 2024 by zerostwo
1
How touse output from scTE pipeline to generate a Seurat object
#91 opened May 10, 2024 by OwenHoare1989
Why do I encounter this error when opening scTE?
#90 opened May 8, 2024 by l1y1y
6
Requires python >= 3.9, not 3.6
#89 opened Apr 24, 2024 by dannyconrad
12
filterCRs IndexError:list index out of range
#88 opened Apr 24, 2024 by bio-xtt
7
gene expression from scTE were not consistent with cellranger
#87 opened Apr 17, 2024 by baishengjun
2
ValueError: Invalid Mode: uR
#85 opened Apr 12, 2024 by Kiliankleemann
3
How do I find which ones are TEs and which are genes?
#84 opened Apr 8, 2024 by gdolsten
1
Wrong example of ATAC
#81 opened Feb 20, 2024 by dantingz
1
Warning message Query V350183366L1C005R01400986149/1 is marked as paired, but its mate does not occur next to it in your BAM file. Skipping.
#80 opened Feb 15, 2024 by yc508
2
IndexError: list index out of range
#79 opened Dec 6, 2023 by Kiliankleemann
4
scTE exon/UTR TE counts inclusion
#77 opened Nov 9, 2023 by bosscrab1
1
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