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STYLE: Call itk.ParameterObject.GetDefaultParameterMap the static way #351

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thewtex merged 1 commit into from
Dec 8, 2025
Merged

STYLE: Call itk.ParameterObject.GetDefaultParameterMap the static way #351

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2 changes: 1 addition & 1 deletion examples/ITK_Example01_SimpleRegistration.ipynb
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Expand Up @@ -66,7 +66,7 @@
"outputs": [],
"source": [
"parameter_object = itk.ParameterObject.New()\n",
"default_rigid_parameter_map = parameter_object.GetDefaultParameterMap('rigid')\n",
"default_rigid_parameter_map = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"parameter_object.AddParameterMap(default_rigid_parameter_map)"
]
},
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6 changes: 3 additions & 3 deletions examples/ITK_Example02_CustomOrMultipleParameterMaps.ipynb
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Expand Up @@ -182,19 +182,19 @@
"# Import Default Parameter Map\n",
"parameter_object = itk.ParameterObject.New()\n",
"resolutions = 3\n",
"parameter_map_rigid = parameter_object.GetDefaultParameterMap('rigid',3)\n",
"parameter_map_rigid = itk.ParameterObject.GetDefaultParameterMap('rigid',3)\n",
"parameter_object.AddParameterMap(parameter_map_rigid)\n",
"\n",
"# For the bspline default parameter map, an extra argument can be specified that define the final bspline grid spacing in physical space. \n",
"parameter_map_bspline = parameter_object.GetDefaultParameterMap(\"bspline\", resolutions, 20.0)\n",
"parameter_map_bspline = itk.ParameterObject.GetDefaultParameterMap(\"bspline\", resolutions, 20.0)\n",
"parameter_object.AddParameterMap(parameter_map_bspline)\n",
"\n",
"\n",
"# .. and/or load custom parameter maps from .txt file\n",
"parameter_object.AddParameterFile('data/parameters_BSpline.txt')\n",
"\n",
"# ... and/or load and customize more\n",
"parameter_map_custom = parameter_object.GetDefaultParameterMap('rigid')\n",
"parameter_map_custom = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"parameter_map_custom['Transform'] = ['BSplineTransform']\n",
"parameter_map_custom['Metric'] = ['AdvancedMattesMutualInformation']\n",
"parameter_object.AddParameterMap(parameter_map_custom)\n",
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2 changes: 1 addition & 1 deletion examples/ITK_Example04_InitialTransformAndMultiThreading.ipynb
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Expand Up @@ -50,7 +50,7 @@
"\n",
"# Import Default Parameter Map\n",
"parameter_object = itk.ParameterObject.New()\n",
"parameter_map_rigid = parameter_object.GetDefaultParameterMap('rigid')\n",
"parameter_map_rigid = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"parameter_object.AddParameterMap(parameter_map_rigid)"
]
},
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2 changes: 1 addition & 1 deletion examples/ITK_Example05_PointRegistration.ipynb
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"\n",
"# Import and adjust Parameter Map\n",
"parameter_object = itk.ParameterObject.New()\n",
"parameter_map_rigid = parameter_object.GetDefaultParameterMap('rigid')\n",
"parameter_map_rigid = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"parameter_map_rigid['Registration'] = [\n",
" 'MultiMetricMultiResolutionRegistration']\n",
"original_metric = parameter_map_rigid['Metric']\n",
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2 changes: 1 addition & 1 deletion examples/ITK_Example06_GroupwiseRegistration.ipynb
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Expand Up @@ -50,7 +50,7 @@
"source": [
"# Create Groupwise Parameter Object\n",
"parameter_object = itk.ParameterObject.New()\n",
"groupwise_parameter_map = parameter_object.GetDefaultParameterMap('groupwise')\n",
"groupwise_parameter_map = itk.ParameterObject.GetDefaultParameterMap('groupwise')\n",
"parameter_object.AddParameterMap(groupwise_parameter_map)"
]
},
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2 changes: 1 addition & 1 deletion examples/ITK_Example08_SimpleTransformix.ipynb
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Expand Up @@ -47,7 +47,7 @@
"\n",
"# Import Default Parameter Map\n",
"parameter_object = itk.ParameterObject.New()\n",
"parameter_map_rigid = parameter_object.GetDefaultParameterMap('rigid')\n",
"parameter_map_rigid = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"parameter_object.AddParameterMap(parameter_map_rigid)"
]
},
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6 changes: 3 additions & 3 deletions examples/ITK_Example09_PointSetAndMaskTransformation.ipynb
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Expand Up @@ -51,11 +51,11 @@
"\n",
"# Import Default Parameter Map\n",
"parameter_object = itk.ParameterObject.New()\n",
"parameter_map_rigid = parameter_object.GetDefaultParameterMap('rigid')\n",
"parameter_map_rigid = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"parameter_object.AddParameterMap(parameter_map_rigid)\n",
"parameter_map_affine= parameter_object.GetDefaultParameterMap('affine')\n",
"parameter_map_affine= itk.ParameterObject.GetDefaultParameterMap('affine')\n",
"parameter_object.AddParameterMap(parameter_map_affine)\n",
"parameter_map_bspline = parameter_object.GetDefaultParameterMap('bspline')\n",
"parameter_map_bspline = itk.ParameterObject.GetDefaultParameterMap('bspline')\n",
"parameter_object.AddParameterMap(parameter_map_bspline)"
]
},
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2 changes: 1 addition & 1 deletion examples/ITK_Example10_Transformix_Jacobian.ipynb
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"\n",
"# Import Default Parameter Map\n",
"parameter_object = itk.ParameterObject.New()\n",
"parameter_map_rigid = parameter_object.GetDefaultParameterMap('rigid')\n",
"parameter_map_rigid = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"parameter_object.AddParameterMap(parameter_map_rigid)"
]
},
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8 changes: 4 additions & 4 deletions examples/ITK_Example11_Transformix_DeformationField.ipynb
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"\n",
"# Import Default Parameter Map\n",
"parameter_object = itk.ParameterObject.New()\n",
"parameter_map_rigid = parameter_object.GetDefaultParameterMap('rigid')\n",
"parameter_map_bspline = parameter_object.GetDefaultParameterMap('bspline')\n",
"parameter_map_rigid = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"parameter_map_bspline = itk.ParameterObject.GetDefaultParameterMap('bspline')\n",
"\n",
"parameter_object.AddParameterMap(parameter_map_rigid)\n",
"parameter_object.AddParameterMap(parameter_map_bspline)"
Expand Down Expand Up @@ -170,8 +170,8 @@
"source": [
"# Import Default Parameter Map and adjust parameters\n",
"parameter_object = itk.ParameterObject.New()\n",
"# parameter_map_rigid = parameter_object.GetDefaultParameterMap('rigid')\n",
"# parameter_map_bspline = parameter_object.GetDefaultParameterMap('rigid')\n",
"# parameter_map_rigid = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"# parameter_map_bspline = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"parameter_map_bspline['HowToCombineTransforms'] = ['Compose']\n",
"parameter_map_rigid['HowToCombineTransforms'] = ['Compose']\n",
"parameter_object.AddParameterMap(parameter_map_rigid)\n",
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2 changes: 1 addition & 1 deletion examples/ITK_Example12_DifferentSizeTransformation.ipynb
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"\n",
"# Import Default Parameter Map\n",
"parameter_object = itk.ParameterObject.New()\n",
"parameter_map_rigid = parameter_object.GetDefaultParameterMap('affine')\n",
"parameter_map_rigid = itk.ParameterObject.GetDefaultParameterMap('affine')\n",
"parameter_object.AddParameterMap(parameter_map_rigid)"
]
},
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4 changes: 2 additions & 2 deletions examples/ITK_Example13_ITKResampling.ipynb
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"\n",
"# Import Default Parameter Maps\n",
"parameter_object = itk.ParameterObject.New()\n",
"parameter_map_rigid = parameter_object.GetDefaultParameterMap('rigid')\n",
"parameter_map_rigid = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"parameter_object.AddParameterMap(parameter_map_rigid)\n",
"parameter_map_affine = parameter_object.GetDefaultParameterMap('affine')\n",
"parameter_map_affine = itk.ParameterObject.GetDefaultParameterMap('affine')\n",
"parameter_object.AddParameterMap(parameter_map_affine)"
]
},
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2 changes: 1 addition & 1 deletion examples/ITK_Example17_MONAIWithPreregistration.ipynb
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Expand Up @@ -169,7 +169,7 @@
"source": [
"# Elastix affine parameter map\n",
"parameter_object = itk.ParameterObject()\n",
"affine_parameter_map = parameter_object.GetDefaultParameterMap('affine')\n",
"affine_parameter_map = itk.ParameterObject.GetDefaultParameterMap('affine')\n",
"affine_parameter_map['NumberOfResolutions'] = \"2\"\n",
"affine_parameter_map['MaximumNumberOfIterations'] = (\"64\", )\n",
"parameter_object.AddParameterMap(affine_parameter_map)\n",
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2 changes: 1 addition & 1 deletion examples/ITK_Example18_MONAI_affine_Elastix_nonlinear.ipynb
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Expand Up @@ -442,7 +442,7 @@
"source": [
"# B-spline parameter object\n",
"parameter_object = itk.ParameterObject()\n",
"parameter_map = parameter_object.GetDefaultParameterMap('bspline')\n",
"parameter_map = itk.ParameterObject.GetDefaultParameterMap('bspline')\n",
"parameter_object.AddParameterMap(parameter_map)\n",
"\n",
"result_image, _ = itk.elastix_registration_method(fixed_image, \n",
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2 changes: 1 addition & 1 deletion examples/ITK_Example20_PixelTypes.ipynb
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Expand Up @@ -69,7 +69,7 @@
"source": [
"# Define a rigid parameter object\n",
"parameter_object = itk.ParameterObject.New()\n",
"default_rigid_parameter_map = parameter_object.GetDefaultParameterMap('rigid')\n",
"default_rigid_parameter_map = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"parameter_object.AddParameterMap(default_rigid_parameter_map)\n",
"\n",
"# Non-exhaustive list of image types supported by itk-elastix\n",
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4 changes: 2 additions & 2 deletions examples/ITK_Example21_ConstrainedRegistration.ipynb
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Expand Up @@ -177,7 +177,7 @@
],
"source": [
"rigid_parameter_object = itk.ParameterObject.New()\n",
"rigid_parameter_map = rigid_parameter_object.GetDefaultParameterMap('rigid')\n",
"rigid_parameter_map = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"rigid_parameter_map['FinalBSplineInterpolationOrder'] = ('0')\n",
"rigid_parameter_object.AddParameterMap(rigid_parameter_map)\n",
"\n",
Expand Down Expand Up @@ -288,7 +288,7 @@
],
"source": [
"constrained_rigid_parameter_object = itk.ParameterObject.New()\n",
"constrained_rigid_parameter_map = constrained_rigid_parameter_object.GetDefaultParameterMap('rigid')\n",
"constrained_rigid_parameter_map = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"constrained_rigid_parameter_map['FinalBSplineInterpolationOrder'] = ('0')\n",
"constrained_rigid_parameter_map['AutomaticScalesEstimation'] = ('false',)\n",
"constrained_rigid_parameter_map['Scales'] = ('1666.5', '1', str(np.finfo(fixed_image.dtype).max))\n",
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2 changes: 1 addition & 1 deletion examples/ITK_Example22_ConvertToITKTransform.ipynb
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"\n",
"for transform_info in transform_schedule:\n",
" parameter_object.AddParameterMap(\n",
" parameter_object.GetDefaultParameterMap(transform_info.elastix_name)\n",
" itk.ParameterObject.GetDefaultParameterMap(transform_info.elastix_name)\n",
" )\n",
"\n",
"print(parameter_object)"
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6 changes: 3 additions & 3 deletions examples/ITK_Registration_App.ipynb
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Expand Up @@ -204,17 +204,17 @@
" parameters = itk.ParameterObject.New()\n",
"\n",
" resolutions = 3\n",
" default_rigid = parameters.GetDefaultParameterMap(\"rigid\", resolutions)\n",
" default_rigid = itk.ParameterObject.GetDefaultParameterMap(\"rigid\", resolutions)\n",
" parameters.AddParameterMap(default_rigid)\n",
"\n",
" if (regType.value!='rigid'):\n",
" resolutions = 2\n",
" default_affine = parameters.GetDefaultParameterMap(\"affine\", resolutions)\n",
" default_affine = itk.ParameterObject.GetDefaultParameterMap(\"affine\", resolutions)\n",
" parameters.AddParameterMap(default_affine)\n",
"\n",
" if (regType.value=='bspline'):\n",
" resolutions = 1\n",
" default_bspline = parameters.GetDefaultParameterMap(\"bspline\", resolutions)\n",
" default_bspline = itk.ParameterObject.GetDefaultParameterMap(\"bspline\", resolutions)\n",
" parameters.AddParameterMap(default_bspline)\n",
"\n",
" parameters.RemoveParameter(\"ResultImageFormat\")\n",
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2 changes: 1 addition & 1 deletion examples/ITK_UnitTestExample1_RigidRegistration.ipynb
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"\n",
"# Import Default Parameter Map\n",
"parameter_object = itk.ParameterObject.New()\n",
"default_rigid_parameter_map = parameter_object.GetDefaultParameterMap('rigid')\n",
"default_rigid_parameter_map = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"parameter_object.AddParameterMap(default_rigid_parameter_map)"
]
},
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2 changes: 1 addition & 1 deletion examples/ITK_UnitTestExample2_AffineRegistration.ipynb
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"\n",
"# Import Default Parameter Map\n",
"parameter_object = itk.ParameterObject.New()\n",
"default_affine_parameter_map = parameter_object.GetDefaultParameterMap('affine',4)\n",
"default_affine_parameter_map = itk.ParameterObject.GetDefaultParameterMap('affine',4)\n",
"default_affine_parameter_map['FinalBSplineInterpolationOrder'] = ['0']\n",
"parameter_object.AddParameterMap(default_affine_parameter_map)"
]
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4 changes: 2 additions & 2 deletions examples/ITK_UnitTestExample3_BsplineRegistration.ipynb
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Expand Up @@ -68,10 +68,10 @@
"\n",
"# Import Default Parameter Map\n",
"parameter_object = itk.ParameterObject.New()\n",
"default_affine_parameter_map = parameter_object.GetDefaultParameterMap('affine',4)\n",
"default_affine_parameter_map = itk.ParameterObject.GetDefaultParameterMap('affine',4)\n",
"default_affine_parameter_map['FinalBSplineInterpolationOrder'] = ['1']\n",
"parameter_object.AddParameterMap(default_affine_parameter_map)\n",
"default_bspline_parameter_map = parameter_object.GetDefaultParameterMap('bspline',4)\n",
"default_bspline_parameter_map = itk.ParameterObject.GetDefaultParameterMap('bspline',4)\n",
"default_bspline_parameter_map['FinalBSplineInterpolationOrder'] = ['1']\n",
"parameter_object.AddParameterMap(default_bspline_parameter_map)"
]
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2 changes: 1 addition & 1 deletion examples/ITK_UnitTestExample4_MaskedRegistration.ipynb
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"\n",
"# Import Default Parameter Map\n",
"parameter_object = itk.ParameterObject.New()\n",
"default_rigid_parameter_map = parameter_object.GetDefaultParameterMap('rigid')\n",
"default_rigid_parameter_map = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"parameter_object.AddParameterMap(default_rigid_parameter_map)\n",
"\n",
"# Call registration function\n",
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4 changes: 2 additions & 2 deletions examples/ITK_UnitTestExample5_GroupwiseRegistration.ipynb
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"\n",
"# Create Groupwise Parameter Object\n",
"parameter_object = itk.ParameterObject.New()\n",
"groupwise_parameter_map = parameter_object.GetDefaultParameterMap('groupwise',4)\n",
"groupwise_parameter_map = itk.ParameterObject.GetDefaultParameterMap('groupwise',4)\n",
"groupwise_parameter_map['FinalBSplineInterpolationOrder'] = ['0']\n",
"groupwise_parameter_map['Transform'] = ['EulerStackTransform']\n",
"groupwise_parameter_map['AutomaticScalesEstimation'] = ['true']\n",
Expand Down Expand Up @@ -157,7 +157,7 @@
"\n",
"# Create Groupwise Parameter Object\n",
"parameter_object = itk.ParameterObject.New()\n",
"groupwise_parameter_map = parameter_object.GetDefaultParameterMap('groupwise',2)\n",
"groupwise_parameter_map = itk.ParameterObject.GetDefaultParameterMap('groupwise',2)\n",
"groupwise_parameter_map['FinalBSplineInterpolationOrder'] = ['0']\n",
"groupwise_parameter_map['Transform'] = ['EulerStackTransform']\n",
"groupwise_parameter_map['AutomaticScalesEstimation'] = ['true']\n",
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2 changes: 1 addition & 1 deletion examples/ITK_UnitTestExample6_PointSetTransformation.ipynb
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"\n",
"# Import Default Parameter Map\n",
"parameter_object = itk.ParameterObject.New()\n",
"default_rigid_parameter_map = parameter_object.GetDefaultParameterMap('rigid')\n",
"default_rigid_parameter_map = itk.ParameterObject.GetDefaultParameterMap('rigid')\n",
"parameter_object.AddParameterMap(default_rigid_parameter_map)\n",
"\n",
"# # Call registration function\n",
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2 changes: 1 addition & 1 deletion examples/ITK_UnitTestExample7_SizeTransformation.ipynb
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"\n",
"# Import Default Parameter Map\n",
"parameter_object = itk.ParameterObject.New()\n",
"default_rigid_parameter_map = parameter_object.GetDefaultParameterMap('rigid',4)\n",
"default_rigid_parameter_map = itk.ParameterObject.GetDefaultParameterMap('rigid',4)\n",
"default_rigid_parameter_map['FinalBSplineInterpolationOrder'] = ['0']\n",
"parameter_object.AddParameterMap(default_rigid_parameter_map)\n",
"\n",
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