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BUG: permissive cosine computation from non-orthogonal sform had reve… #4847

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merged 3 commits into from
Sep 24, 2024
Merged

BUG: permissive cosine computation from non-orthogonal sform had reve… #4847

merged 3 commits into from
Sep 24, 2024

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cookpa
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@cookpa cookpa commented Sep 12, 2024 •
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…rsed SVD components

U and V were reversed in the reconstruction of M, according to definitions here

https://vxl.github.io/doc/release/core/vnl/html/classvnl__svd.html

As discussed in #4839

cc: @vfonov @hjmjohnson

PR Checklist

  • No API changes were made (or the changes have been approved)
  • No major design changes were made (or the changes have been approved)
  • Added test (or behavior not changed)
  • Updated API documentation (or API not changed)
  • Added license to new files (if any)
  • Added Python wrapping to new files (if any) as described in ITK Software Guide Section 9.5
  • Added ITK examples for all new major features (if any)

Refer to the ITK Software Guide for
further development details if necessary.

@github-actions github-actions bot added type:Bug Inconsistencies or issues which will cause an incorrect result under some or all circumstances area:IO Issues affecting the IO module labels Sep 12, 2024
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cookpa commented Sep 12, 2024

I will see if I can modify the existing tests to catch this

@cookpa
BUG: NIFTI "permissive" direction cosine error
c42f500 
Computation from non-orthogonal sform had reversed SVD components

U and V were reversed in the reconstruction of M, according to definitions here

https://vxl.github.io/doc/release/core/vnl/html/classvnl__svd.html
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vfonov commented Sep 13, 2024

oops, looks like my typo

@cookpa
ENH: Test non-orthogonal NIFTI sform
a20a84f 
Catches direction flip introduced by earlier SVD bug
@github-actions github-actions bot added the type:Testing Ensure that the purpose of a class is met/the results on a wide set of test cases are correct label Sep 13, 2024
@cookpa cookpa marked this pull request as ready for review September 13, 2024 17:25
jhlegarreta
jhlegarreta reviewed Sep 13, 2024
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Thanks for doing this @cookpa 💯.

An inline comment.

Modules/IO/NIFTI/test/itkNiftiReadWriteDirectionTest.cxx Outdated Show resolved Hide resolved
@github-actions github-actions bot added the type:Infrastructure Infrastructure/ecosystem related changes, such as CMake or buildbots label Sep 16, 2024
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/azp run ITK.macOS.Python

@thewtex thewtex requested a review from vfonov September 16, 2024 21:07
dzenanz
dzenanz reviewed Sep 19, 2024
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Is this ready for merging?

thewtex
thewtex approved these changes Sep 24, 2024
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@cookpa well done!

@thewtex thewtex merged commit e88be6e into InsightSoftwareConsortium:master Sep 24, 2024
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@thewtex thewtex thewtex approved these changes

@hjmjohnson hjmjohnson Awaiting requested review from hjmjohnson

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