Cg im moldef work in progress 2

source/documentreference/documentreference-example-genomicfile-af1961831-url.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+
+<DocumentReference xmlns="http://hl7.org/fhir">
+  <id value="example-genomicfile-af1961831-url"/>
+   <identifier>
+    <system value="http://www.somesystemabc.net/identifiers/files"/>
+    <value value="11111"/>
+  </identifier>
+  <status value="current"/>
+  <docStatus value="preliminary"/>
+  <description value="Homo sapiens MHC class I antigen (HLA-B) gene"/>
+  <securityLabel>
+    <coding>
+      <system value="http://terminology.hl7.org/CodeSystem/v3-Confidentiality"/>
+      <code value="R"/>
+      <display value="Restricted"/>
+    </coding>
+  </securityLabel>
+   <content>
+    <attachment>
+      <contentType value="text/html"/>
+      <url value="https://www.ebi.ac.uk/ena/browser/api/fasta/AF196183.1"/>
+      <title value="Homo sapiens MHC class I antigen (HLA-B) gene"/>
+    </attachment>
+  </content>
+</DocumentReference>

source/documentreference/documentreference-example-genomicfile-cyp2c19-accession.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+
+<DocumentReference xmlns="http://hl7.org/fhir">
+  <id value="example-genomicfile-cyp2c19-accession"/>
+
+  <identifier>
+    <system value="https://www.ncbi.nlm.nih.gov/nuccore"/>
+    <value value="NG_008384.3"/>
+  </identifier>
+  <status value="current"/>
+  <docStatus value="preliminary"/>
+  <description value="CYP2C19 gene sequence"/>
+  <securityLabel>
+    <coding>
+      <system value="http://terminology.hl7.org/CodeSystem/v3-Confidentiality"/>
+      <code value="R"/>
+      <display value="Restricted"/>
+    </coding>
+  </securityLabel>
+  <content>
+    <attachment>
+      <contentType value="text/html"/>
+      <url value="https://www.ncbi.nlm.nih.gov/nuccore/NG_008384"/>
+      <title value="Homo sapiens cytochrome P450 family 2 subfamily C member 19 (CYP2C19), RefSeqGene (LRG_584) on chromosome 10"/>
+    </attachment>
+  </content>
+</DocumentReference>

source/documentreference/documentreference-example-genomicfile-cyp2c19-url.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+
+<DocumentReference xmlns="http://hl7.org/fhir">
+  <id value="example-genomicfile-cyp2c19-url"/>
+  <identifier>
+    <system value="http://www.somesystemabc.net/identifiers/files"/>
+    <value value="11111"/>
+  </identifier>
+  <status value="current"/>
+  <docStatus value="preliminary"/>
+  <description value="CYP2C19 gene sequence"/>
+  <securityLabel>
+    <coding>
+      <system value="http://terminology.hl7.org/CodeSystem/v3-Confidentiality"/>
+      <code value="R"/>
+      <display value="Restricted"/>
+    </coding>
+  </securityLabel>
+  <content>
+    <attachment>
+      <contentType value="text/html"/>
+      <url value="https://www.ncbi.nlm.nih.gov/nuccore/NG_008384"/>
+      <title value="Homo sapiens cytochrome P450 family 2 subfamily C member 19 (CYP2C19), RefSeqGene (LRG_584) on chromosome 10"/>
+    </attachment>
+  </content>
+</DocumentReference>

source/documentreference/documentreference-example-genomicfile-hla00001.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+
+<DocumentReference xmlns="http://hl7.org/fhir">
+  <id value="example-genomicfile-hla00001"/>
+
+  <identifier>
+    <system value="http://www.somesystemabc.net/identifiers/files"/>
+    <value value="11111"/>
+  </identifier>
+  <status value="current"/>
+  <docStatus value="preliminary"/>
+  <description value="A sample Document Reference instance representing HLA00001."/>
+  <securityLabel>
+    <coding>
+      <system value="http://terminology.hl7.org/CodeSystem/v3-Confidentiality"/>
+      <code value="R"/>
+      <display value="Restricted"/>
+    </coding>
+  </securityLabel>
+  <content>
+    <attachment>
+      <contentType value="text/html"/>
+      <url value="https://www.ebi.ac.uk/Tools/dbfetch/dbfetch?db=imgthla;id=HLA00001;format=fasta;style=raw"/>
+      <title value="HLA00001"/>
+    </attachment>
+  </content>
+</DocumentReference>

source/documentreference/documentreference-example-genomicfile-mw7162561.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+
+<DocumentReference xmlns="http://hl7.org/fhir">
+  <id value="example-genomicfile-mw7162561"/>
+
+  <identifier>
+    <system value="http://www.somesystemabc.net/identifiers/files"/>
+    <value value="11111"/>
+  </identifier>
+  <status value="current"/>
+  <docStatus value="preliminary"/>
+  <description value="A sample Document Reference instance representing Homo sapiens isolate 7 BRCA1 (BRCA1) gene, exon 10 and partial cds."/>
+  <securityLabel>
+    <coding>
+      <system value="http://terminology.hl7.org/CodeSystem/v3-Confidentiality"/>
+      <code value="R"/>
+      <display value="Restricted"/>
+    </coding>
+  </securityLabel>
+  <content>
+    <attachment>
+      <contentType value="text/html"/>
+      <url value="https://www.ncbi.nlm.nih.gov/nuccore/MW716256.1?report=fasta"/>
+      <title value="Homo sapiens isolate 7 BRCA1 (BRCA1) gene, exon 10 and partial cds"/>
+    </attachment>
+  </content>
+</DocumentReference>

source/documentreference/documentreference-example-genomicfile-nc00001010-url.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+
+<DocumentReference xmlns="http://hl7.org/fhir">
+  <id value="example-genomicfile-nc00001010-url"/>
+  <identifier>
+    <system value="http://www.somesystemabc.net/identifiers/files"/>
+    <value value="11111"/>
+  </identifier>
+  <status value="current"/>
+  <docStatus value="preliminary"/>
+  <description value="Chr10, GRCh37.p13 sequence"/>
+  <securityLabel>
+    <coding>
+      <system value="http://terminology.hl7.org/CodeSystem/v3-Confidentiality"/>
+      <code value="R"/>
+      <display value="Restricted"/>
+    </coding>
+  </securityLabel>
+  <content>
+    <attachment>
+      <contentType value="text/html"/>
+      <url value="https://www.ncbi.nlm.nih.gov/nuccore/NC_000010.10?report=fasta"/>
+      <title value="Homo sapiens chromosome 10, GRCh37.p13 Primary Assembly, NC_000010.10"/>
+    </attachment>
+  </content>
+</DocumentReference>

source/documentreference/documentreference-example-genomicfile-ng0083843.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+
+<DocumentReference xmlns="http://hl7.org/fhir">
+  <id value="example-genomicfile-ng0083843"/>
+  <identifier>
+    <system value="http://www.somesystemabc.net/identifiers/files"/>
+    <value value="11111"/>
+  </identifier>
+  <status value="current"/>
+  <docStatus value="preliminary"/>
+  <description value="A sample Document Reference instance representing Homo sapiens cytochrome P450 family 2 subfamily C member 19 (CYP2C19), RefSeqGene (LRG_584) on chromosome 10."/>
+  <securityLabel>
+    <coding>
+      <system value="http://terminology.hl7.org/CodeSystem/v3-Confidentiality"/>
+      <code value="R"/>
+      <display value="Restricted"/>
+    </coding>
+  </securityLabel>
+  <content>
+    <attachment>
+      <contentType value="text/html"/>
+      <url value="https://www.ncbi.nlm.nih.gov/nuccore/NG_008384.3?report=fasta"/>
+      <title value="Homo sapiens cytochrome P450 family 2 subfamily C member 19 (CYP2C19), RefSeqGene (LRG_584) on chromosome 10"/>
+    </attachment>
+  </content>
+</DocumentReference>

source/documentreference/documentreference-example-genomicfile-nm0002513.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+
+<DocumentReference xmlns="http://hl7.org/fhir">
+  <id value="example-genomicfile-nm0002513"/>
+
+  <identifier>
+    <system value="http://www.somesystemabc.net/identifiers/files"/>
+    <value value="11111"/>
+  </identifier>
+  <status value="current"/>
+  <docStatus value="preliminary"/>
+  <description value="A sample Document Reference instance representing Homo sapiens mutS homolog 2 (MSH2), transcript variant 1, mRNA."/>
+  <securityLabel>
+    <coding>
+      <system value="http://terminology.hl7.org/CodeSystem/v3-Confidentiality"/>
+      <code value="R"/>
+      <display value="Restricted"/>
+    </coding>
+  </securityLabel>
+  <content>
+    <attachment>
+      <contentType value="text/html"/>
+      <url value="https://www.ncbi.nlm.nih.gov/nuccore/NM_000251.3?report=fasta"/>
+      <title value="Homo sapiens mutS homolog 2 (MSH2), transcript variant 1, mRNA"/>
+    </attachment>
+  </content>
+</DocumentReference>

source/documentreference/documentreference-example-genomicfile-nm0007694.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+
+<DocumentReference xmlns="http://hl7.org/fhir">
+  <id value="example-genomicfile-nm0007694"/>
+
+  <identifier>
+    <system value="http://www.somesystemabc.net/identifiers/files"/>
+    <value value="11111"/>
+  </identifier>
+  <status value="current"/>
+  <docStatus value="preliminary"/>
+  <description value="(CYP2C19), mRNA"/>
+  <securityLabel>
+    <coding>
+      <system value="http://terminology.hl7.org/CodeSystem/v3-Confidentiality"/>
+      <code value="R"/>
+      <display value="Restricted"/>
+    </coding>
+  </securityLabel>
+  <content>
+    <attachment>
+      <contentType value="text/html"/>
+      <url value="https://www.ncbi.nlm.nih.gov/nuccore/NM_000769.4?report=fasta"/>
+      <title value="Homo sapiens cytochrome P450 family 2 subfamily C member 19 (CYP2C19), mRNA"/>
+    </attachment>
+  </content>
+</DocumentReference>

source/documentreference/documentreference-example-genomicfile-nm0020245.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+
+<DocumentReference xmlns="http://hl7.org/fhir">
+  <id value="example-genomicfile-nm0020245"/>
+  <identifier>
+    <system value="http://www.somesystemabc.net/identifiers/files"/>
+    <value value="11111"/>
+  </identifier>
+  <status value="current"/>
+  <docStatus value="preliminary"/>
+  <description value="A sample Document Reference instance representing Homo sapiens FMRP translational regulator 1 (FMR1), transcript variant ISO1, mRNA."/>
+  <securityLabel>
+    <coding>
+      <system value="http://terminology.hl7.org/CodeSystem/v3-Confidentiality"/>
+      <code value="R"/>
+      <display value="Restricted"/>
+    </coding>
+  </securityLabel>
+  <content>
+    <attachment>
+      <contentType value="text/html"/>
+      <url value="https://www.ncbi.nlm.nih.gov/nuccore/NM_002024.5?report=fasta"/>
+      <title value="Homo sapiens FMRP translational regulator 1 (FMR1), transcript variant ISO1, mRNA"/>
+    </attachment>
+  </content>
+</DocumentReference>