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Cg im moldef work in progress 2#3159

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khalifa-aly wants to merge 102 commits intomasterHL7/fhir:masterfrom cg-im-moldef_work_in_progress_2HL7/fhir:cg-im-moldef_work_in_progress_2Copy head branch name to clipboard

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Commits on Sep 3, 2024

• changing representation.resolvable to a reference to DocumentReference resource

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• changing representation.resolvable to a reference to DocumentReference resource instead of attachement

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Commits on Sep 4, 2024

• adding simple sequence examples for literal "A" as DNA and Amino Acid according to IUPAC

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• adding sequence examples for resolvable element

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Commits on Sep 5, 2024

• QA edit: renaming Document Reference examples

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• Code system and valueset moleculardefinition encoding

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• QA renaming the encoding code system to iupac-nucleotide

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• QA renaming the encoding code system to iupac-nucleotide

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• QA removing duplicate description

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• QA edits

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• Allele literal example

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• More allele examples and supporting resource instances

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Commits on Sep 6, 2024

• QA edit

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• QA edit

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Commits on Sep 19, 2024

• Variation examples for CYP2C19 in various formats, e.g., VRS, SPDI, and HGVS

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• AlleleSliced Example: HLA00381

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• QA edits

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• updating the example list to include a new set of examples

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Commits on Sep 20, 2024

• more descriptive titles and descriptions

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• Adding DocRef examples of genetic files that Support Molecular Definition resource instances

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• QA edit, adjusting file names

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• QA edit, adjusting file names

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• QA edit, adjusting file names

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• QA edit, element order and extra spaces

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• Merge pull request #3165 from HL7/master

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Commits on Oct 11, 2024

• Merge branch 'master' into cg-im-moldef_work_in_progress_2

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• extracted sequence examples of CYP2C19

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• Merge remote-tracking branch 'origin/cg-im-moldef_work_in_progress_2' into cg-im-moldef_work_in_progress_2

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• Concatenated example of CYP2C19

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• Repeated examples for FMR1

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• examples of repeated sequence that was edited by referenced and contained resources

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Commits on Oct 15, 2024

• Example list update

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Commits on Oct 16, 2024

• Removing Autogenerated Text

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Commits on Oct 17, 2024

• Merge branch 'master' into cg-im-moldef_work_in_progress_2

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Commits on Oct 29, 2024

• QA edit, adding genotype concept

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• Merge remote-tracking branch 'origin/cg-im-moldef_work_in_progress_2' into cg-im-moldef_work_in_progress_2

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Commits on Oct 30, 2024

• Adding Sequence and document reference to Homo sapiens chromosome 10, GRCh37.p13 Primary Assembly, NC_000010.10

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• Adding allele and variation example instance of PgX-var-1011 and 1012

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Commits on Oct 31, 2024

• Adding variation example instance of PgX-var-1013, 1014 and 1015

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• Adding variation example instance of PgX-var-1016, 1017 and 1018

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Commits on Nov 1, 2024

• Merge pull request #3207 from HL7/master

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• Adding variation example instance of PgX-var-1019 and 1020

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• Merge remote-tracking branch 'origin/cg-im-moldef_work_in_progress_2' into cg-im-moldef_work_in_progress_2

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Commits on Nov 4, 2024

• Adding NC_000010.10 to the example list

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• Adding Pgx-var-1021

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• QA edit, adjusting display name

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• Adding new examples to the list

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• QA edits

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Commits on Nov 25, 2024

• Merge pull request #3240 from HL7/master

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Commits on Dec 3, 2024

• adding the coordinateSystem to the location element

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• updating the allele examples according to the newly added coordinateSystem element

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• updating the haplotype example according to the newly added coordinateSystem element

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• updating the CYP2C19 Variation examples according to the newly added coordinateSystem element

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• updating the PgX Variation examples according to the newly added coordinateSystem element

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Commits on Dec 11, 2024

• Adding the Description element to the resource as a markdown

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• Adding the topology element to the resource as a codeable concept

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• renaming the type element to moleculeType and make it a codeable concept

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• Adding another type element and make it a codeable concept 0..* to describe various categorization schemas

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• QA edit

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• updating the moleculeType element within example instances

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• updating the moleculeType element within example instances

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• updating the moleculeType element within example instances

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• updating the moleculeType element within example instances

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• updating the moleculeType element within example instances

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• updating the moleculeType element within example instances

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• updating the moleculeType element within example instances

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• updating the allele profile to reflect the rename moleculeType element

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• updating the alleleSliced profile to reflect the rename moleculeType element

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• updating the genotype profile to reflect the rename moleculeType element

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• updating the haplotype profile to reflect the rename of moleculeType element

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• updating the sequence profile to reflect the rename of moleculeType element

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• updating the variation profile to reflect the rename of moleculeType element

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• updating the search params to reflect the rename of moleculeType element

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  ef7ccbd

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• updating moleculeType element to codeable concept within examples

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• updating moleculeType element to codeable concept within examples

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• updating moleculeType element to codeable concept within examples

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• updating moleculeType element to codeable concept within examples

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• updating moleculeType element to codeable concept within examples

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• updating moleculeType element to codeable concept within examples

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• updating moleculeType element to codeable concept within examples

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• updating moleculeType element to codeable concept within examples

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• updating moleculeType element to codeable concept within examples

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• updating moleculeType element to codeable concept within examples

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• updating moleculeType element to codeable concept within examples

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• updating moleculeType element to codeable concept within examples

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• updating moleculeType element to codeable concept within examples

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• updating moleculeType element to codeable concept within examples

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Commits on Dec 19, 2024

• updating representation.extracted to reflect the new coordinate interval structure

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• updating representation.relative to reflect the new coordinate interval structure

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• updating end and start elements to be of integer datatype 1..1

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• updating the example to reflect the new coordinate interval structure

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• updating the example to reflect the new coordinate interval structure

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• updating the example to reflect the new coordinate interval structure

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• updating the example to reflect the new coordinate interval structure

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• updating the example to reflect the new coordinate interval structure

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• updating the example to reflect the new coordinate interval structure

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• QA edit, start and end element names

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• comment for deleting commented out lines later

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Commits on Dec 20, 2024

• Merge branch 'master' into cg-im-moldef_work_in_progress_2

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Commits on Jan 7, 2025

• Merge pull request #3256 from HL7/master

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• removing un-necessary element

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• removing un-necessary element

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