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Add sequence adapter config in afterAttach for baseTrackConfig #4037

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@cmdcolin cmdcolin commented Nov 3, 2023

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@github-actions github-actions bot added the needs label triage Needs a label to show in changelog (breaking, enhancement, bug, documentation, or internal) label Nov 3, 2023
@cmdcolin cmdcolin added enhancement New feature or request and removed needs label triage Needs a label to show in changelog (breaking, enhancement, bug, documentation, or internal) labels Nov 3, 2023
@cmdcolin cmdcolin force-pushed the basetrack_add_sequenceadapter branch from 96edcaa to 305e7d0 Compare December 20, 2023 22:21
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this has a working proof of concept in the volvox config now

code is a little hacky and needs work still, but i think it is still a nice step forward and a proof of concept

can visit https://jbrowse.org/code/jb2/basetrack_add_sequenceadapter/?config=test_data%2Fvolvox%2Fconfig.json&session=share-3DJABEwV7i&password=pCQTy and see that cram tracks still work, but all the sequenceAdapters are removed from the config.json

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one goal, rather than just addressing this issue for bam/cram, is to make adapter available for other types of tracks such as rendering protein letters on genes

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