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@GMOD

Generic Model Organism Database Project

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  1. Chado Chado Public

    the GMOD database schema

    PLpgSQL 39 25

  2. jbrowse-components jbrowse-components Public

    Source code for JBrowse 2, a modern React-based genome browser

    TypeScript 212 63

  3. jbrowse jbrowse Public

    JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

    JavaScript 463 198

  4. Apollo Apollo Public

    Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

    Groovy 129 85

Repositories

Showing 10 of 101 repositories
  • jbrowse-components Public

    Source code for JBrowse 2, a modern React-based genome browser

    GMOD/jbrowse-components’s past year of commit activity
    TypeScript 212 Apache-2.0 63 306 (5 issues need help) 19 Updated Dec 30, 2024
  • bgzf-filehandle Public

    Nodejs filehandle for reading bgzip+.gzi compressed files

    GMOD/bgzf-filehandle’s past year of commit activity
    TypeScript 7 MIT 4 5 2 Updated Dec 29, 2024
  • Apollo3 Public

    JBrowse 2 plugin for editing annotations on an Apollo server

    GMOD/Apollo3’s past year of commit activity
    TypeScript 8 Apache-2.0 4 57 12 Updated Dec 20, 2024
  • react-msaview Public

    A multiple sequence alignment viewer

    GMOD/react-msaview’s past year of commit activity
    TypeScript 18 MIT 1 25 0 Updated Dec 19, 2024
  • vcf-js Public

    High performance Variant Call Format (VCF) parser in pure JavaScript

    GMOD/vcf-js’s past year of commit activity
    TypeScript 24 MIT 5 2 1 Updated Dec 19, 2024
  • cram-js Public

    Read CRAM v3 and v2 in node or in the browser

    GMOD/cram-js’s past year of commit activity
    TypeScript 18 MIT 9 8 1 Updated Dec 19, 2024
  • bam-js Public

    Parse BAM and BAM index files in javascript for node and the browser

    GMOD/bam-js’s past year of commit activity
    TypeScript 21 MIT 9 9 1 Updated Dec 18, 2024
  • tabix-js Public

    Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser

    GMOD/tabix-js’s past year of commit activity
    TypeScript 14 MIT 5 2 0 Updated Dec 18, 2024
  • indexedfasta-js Public

    Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi

    GMOD/indexedfasta-js’s past year of commit activity
    TypeScript 12 MIT 4 0 1 Updated Dec 18, 2024
  • abortable-promise-cache Public

    add AbortController support to a cache of async requests

    GMOD/abortable-promise-cache’s past year of commit activity
    TypeScript 6 MIT 2 1 5 Updated Dec 15, 2024
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