Publish source directory for bam-js for source-map

[cmdcolin]

Currently use with webpack 5 gives many errors for source map not found

e.g.

WARNING in ../../node_modules/@gmod/bam/esm/bai.js
Module Warning (from ../../node_modules/source-map-loader/dist/cjs.js):
Failed to parse source map from '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/bai.ts' file: Error: ENOENT: no such file or directory, open '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/bai.ts'
 @ ../../node_modules/@gmod/bam/esm/index.js 1:0-24 6:0-52
 @ ../../plugins/alignments/dist/BamAdapter/BamAdapter.js 3:0-36 19:22-29
 @ ../../plugins/alignments/dist/BamAdapter/index.js 9:27-49
 @ ../../plugins/alignments/dist/index.js 6:0-40 27:5-17
 @ ./src/corePlugins.ts 3:0-52 31:44-54
 @ ./src/Loader.tsx 22:0-40 350:52-67
 @ ./src/index.tsx 8:42-60

WARNING in ../../node_modules/@gmod/bam/esm/bamFile.js
Module Warning (from ../../node_modules/source-map-loader/dist/cjs.js):
Failed to parse source map from '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/bamFile.ts' file: Error: ENOENT: no such file or directory, open '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/bamFile.ts'
 @ ../../node_modules/@gmod/bam/esm/index.js 3:0-32 6:0-52
 @ ../../plugins/alignments/dist/BamAdapter/BamAdapter.js 3:0-36 19:22-29
 @ ../../plugins/alignments/dist/BamAdapter/index.js 9:27-49
 @ ../../plugins/alignments/dist/index.js 6:0-40 27:5-17
 @ ./src/corePlugins.ts 3:0-52 31:44-54
 @ ./src/Loader.tsx 22:0-40 350:52-67
 @ ./src/index.tsx 8:42-60

WARNING in ../../node_modules/@gmod/bam/esm/chunk.js
Module Warning (from ../../node_modules/source-map-loader/dist/cjs.js):
Failed to parse source map from '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/chunk.ts' file: Error: ENOENT: no such file or directory, open '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/chunk.ts'
 @ ../../node_modules/@gmod/bam/esm/bai.js 3:0-28 95:28-33 216:28-33
 @ ../../node_modules/@gmod/bam/esm/index.js 1:0-24 6:0-52
 @ ../../plugins/alignments/dist/BamAdapter/BamAdapter.js 3:0-36 19:22-29
 @ ../../plugins/alignments/dist/BamAdapter/index.js 9:27-49
 @ ../../plugins/alignments/dist/index.js 6:0-40 27:5-17
 @ ./src/corePlugins.ts 3:0-52 31:44-54
 @ ./src/Loader.tsx 22:0-40 350:52-67
 @ ./src/index.tsx 8:42-60

WARNING in ../../node_modules/@gmod/bam/esm/constants.js
Module Warning (from ../../node_modules/source-map-loader/dist/cjs.js):
Failed to parse source map from '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/constants.ts' file: Error: ENOENT: no such file or directory, open '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/constants.ts'
 @ ../../node_modules/@gmod/bam/esm/record.js 2:0-36 406:27-48 412:27-53 418:27-47 424:27-48 430:27-49 436:27-50 442:27-47 448:27-47 454:27-51 460:27-48 466:27-45 472:27-55
 @ ../../node_modules/@gmod/bam/esm/index.js 5:0-33 6:0-52
 @ ../../plugins/alignments/dist/BamAdapter/BamAdapter.js 3:0-36 19:22-29
 @ ../../plugins/alignments/dist/BamAdapter/index.js 9:27-49
 @ ../../plugins/alignments/dist/index.js 6:0-40 27:5-17
 @ ./src/corePlugins.ts 3:0-52 31:44-54
 @ ./src/Loader.tsx 22:0-40 350:52-67
 @ ./src/index.tsx 8:42-60

WARNING in ../../node_modules/@gmod/bam/esm/csi.js
Module Warning (from ../../node_modules/source-map-loader/dist/cjs.js):
Failed to parse source map from '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/csi.ts' file: Error: ENOENT: no such file or directory, open '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/csi.ts'
 @ ../../node_modules/@gmod/bam/esm/index.js 2:0-24 6:0-52
 @ ../../plugins/alignments/dist/BamAdapter/BamAdapter.js 3:0-36 19:22-29
 @ ../../plugins/alignments/dist/BamAdapter/index.js 9:27-49
 @ ../../plugins/alignments/dist/index.js 6:0-40 27:5-17
 @ ./src/corePlugins.ts 3:0-52 31:44-54
 @ ./src/Loader.tsx 22:0-40 350:52-67
 @ ./src/index.tsx 8:42-60

WARNING in ../../node_modules/@gmod/bam/esm/htsget.js
Module Warning (from ../../node_modules/source-map-loader/dist/cjs.js):
Failed to parse source map from '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/htsget.ts' file: Error: ENOENT: no such file or directory, open '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/htsget.ts'
 @ ../../node_modules/@gmod/bam/esm/index.js 4:0-34 6:0-52
 @ ../../plugins/alignments/dist/BamAdapter/BamAdapter.js 3:0-36 19:22-29
 @ ../../plugins/alignments/dist/BamAdapter/index.js 9:27-49
 @ ../../plugins/alignments/dist/index.js 6:0-40 27:5-17
 @ ./src/corePlugins.ts 3:0-52 31:44-54
 @ ./src/Loader.tsx 22:0-40 350:52-67
 @ ./src/index.tsx 8:42-60

WARNING in ../../node_modules/@gmod/bam/esm/index.js
Module Warning (from ../../node_modules/source-map-loader/dist/cjs.js):
Failed to parse source map from '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/index.ts' file: Error: ENOENT: no such file or directory, open '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/index.ts'
 @ ../../plugins/alignments/dist/BamAdapter/BamAdapter.js 3:0-36 19:22-29
 @ ../../plugins/alignments/dist/BamAdapter/index.js 9:27-49
 @ ../../plugins/alignments/dist/index.js 6:0-40 27:5-17
 @ ./src/corePlugins.ts 3:0-52 31:44-54
 @ ./src/Loader.tsx 22:0-40 350:52-67
 @ ./src/index.tsx 8:42-60

WARNING in ../../node_modules/@gmod/bam/esm/indexFile.js
Module Warning (from ../../node_modules/source-map-loader/dist/cjs.js):
Failed to parse source map from '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/indexFile.ts' file: Error: ENOENT: no such file or directory, open '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/indexFile.ts'
 @ ../../node_modules/@gmod/bam/esm/bai.js 4:0-36 16:33-42
 @ ../../node_modules/@gmod/bam/esm/index.js 1:0-24 6:0-52
 @ ../../plugins/alignments/dist/BamAdapter/BamAdapter.js 3:0-36 19:22-29
 @ ../../plugins/alignments/dist/BamAdapter/index.js 9:27-49
 @ ../../plugins/alignments/dist/index.js 6:0-40 27:5-17
 @ ./src/corePlugins.ts 3:0-52 31:44-54
 @ ./src/Loader.tsx 22:0-40 350:52-67
 @ ./src/index.tsx 8:42-60

WARNING in ../../node_modules/@gmod/bam/esm/record.js
Module Warning (from ../../node_modules/source-map-loader/dist/cjs.js):
Failed to parse source map from '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/record.ts' file: Error: ENOENT: no such file or directory, open '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/record.ts'
 @ ../../node_modules/@gmod/bam/esm/index.js 5:0-33 6:0-52
 @ ../../plugins/alignments/dist/BamAdapter/BamAdapter.js 3:0-36 19:22-29
 @ ../../plugins/alignments/dist/BamAdapter/index.js 9:27-49
 @ ../../plugins/alignments/dist/index.js 6:0-40 27:5-17
 @ ./src/corePlugins.ts 3:0-52 31:44-54
 @ ./src/Loader.tsx 22:0-40 350:52-67
 @ ./src/index.tsx 8:42-60

WARNING in ../../node_modules/@gmod/bam/esm/sam.js
Module Warning (from ../../node_modules/source-map-loader/dist/cjs.js):
Failed to parse source map from '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/sam.ts' file: Error: ENOENT: no such file or directory, open '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/sam.ts'
 @ ../../node_modules/@gmod/bam/esm/bamFile.js 11:0-40 174:11-26
 @ ../../node_modules/@gmod/bam/esm/index.js 3:0-32 6:0-52
 @ ../../plugins/alignments/dist/BamAdapter/BamAdapter.js 3:0-36 19:22-29
 @ ../../plugins/alignments/dist/BamAdapter/index.js 9:27-49
 @ ../../plugins/alignments/dist/index.js 6:0-40 27:5-17
 @ ./src/corePlugins.ts 3:0-52 31:44-54
 @ ./src/Loader.tsx 22:0-40 350:52-67
 @ ./src/index.tsx 8:42-60

WARNING in ../../node_modules/@gmod/bam/esm/util.js
Module Warning (from ../../node_modules/source-map-loader/dist/cjs.js):
Failed to parse source map from '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/util.ts' file: Error: ENOENT: no such file or directory, open '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/util.ts'
 @ ../../node_modules/@gmod/bam/esm/bai.js 5:0-54 18:22-34 239:11-25
 @ ../../node_modules/@gmod/bam/esm/index.js 1:0-24 6:0-52
 @ ../../plugins/alignments/dist/BamAdapter/BamAdapter.js 3:0-36 19:22-29
 @ ../../plugins/alignments/dist/BamAdapter/index.js 9:27-49
 @ ../../plugins/alignments/dist/index.js 6:0-40 27:5-17
 @ ./src/corePlugins.ts 3:0-52 31:44-54
 @ ./src/Loader.tsx 22:0-40 350:52-67
 @ ./src/index.tsx 8:42-60

WARNING in ../../node_modules/@gmod/bam/esm/virtualOffset.js
Module Warning (from ../../node_modules/source-map-loader/dist/cjs.js):
Failed to parse source map from '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/virtualOffset.ts' file: Error: ENOENT: no such file or directory, open '/home/cdiesh/src/jbrowse-components/node_modules/@gmod/bam/src/virtualOffset.ts'
 @ ../../node_modules/@gmod/bam/esm/bai.js 2:0-44 89:22-31 90:22-31 110:25-34
 @ ../../node_modules/@gmod/bam/esm/index.js 1:0-24 6:0-52
 @ ../../plugins/alignments/dist/BamAdapter/BamAdapter.js 3:0-36 19:22-29
 @ ../../plugins/alignments/dist/BamAdapter/index.js 9:27-49
 @ ../../plugins/alignments/dist/index.js 6:0-40 27:5-17
 @ ./src/corePlugins.ts 3:0-52 31:44-54
 @ ./src/Loader.tsx 22:0-40 350:52-67
 @ ./src/index.tsx 8:42-60

I think adding the src directory to the deployed package can help

Xref mswjs/msw#1030

[cmdcolin]

this will need to be done for most of our modules

[codecov]

Codecov Report

Merging #90 (74fc731) into master (cc597f9) will not change coverage.
The diff coverage is n/a.

@@           Coverage Diff           @@
##           master      #90   +/-   ##
=======================================
  Coverage   82.13%   82.13%           
=======================================
  Files          13       13           
  Lines        1086     1086           
  Branches      225      225           
=======================================
  Hits          892      892           
  Misses        194      194           

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