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v1.10.2 PR #407

Merged
merged 4 commits into from
Feb 28, 2024
Merged

v1.10.2 PR #407

merged 4 commits into from
Feb 28, 2024

Commits on Feb 13, 2024

  1. Cu 8693u6b4u tests continue on fail (#400)

    * CU-8693u6b4u: Make sure failed/errored tests fail the main workflow
    
    * CU-8693u6b4u: Attempt to fix deid multiprocessing, at least for GHA
    
    * CU-8693u6b4u: Fix small docstring issue
    mart-r authored Feb 13, 2024
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Commits on Feb 16, 2024

  1. CU-8693v3tt6 SOMED opcs refset selection (#402)

    * CU-8693v3tt6: Update refset ID for OPCS4 mappings in newer SNOMED releases
    
    * CU-8693v3tt6: Add method to get direct refset mappings
    
    * CU-8693v3tt6: Add tests to direct refset mappings method
    
    * CU-8693v3tt6: Fix OPCS4 refset ID selection logic
    
    * CU-8693v3tt6: Add test for OPCS4 refset ID selection
    mart-r authored Feb 16, 2024
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Commits on Feb 19, 2024

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Commits on Feb 28, 2024

  1. CU-8693qx9yp Deid chunking - hugging face pipeline approach (#405)

    * Pushing chunking update
    
    * Update transformers_ner.py
    
    * Pushing update to config
    
    Added NER config in cat load function
    
    * Update cat.py
    
    * Updating chunking overlap
    
    * CU-8693qx9yp: Add warning for deid multiprocessing with (potentially) non-functioning chunking window
    
    * CU-8693qx9yp: Fix linting issue
    
    ---------
    
    Co-authored-by: mart-r <[email protected]>
    shubham-s-agarwal and mart-r authored Feb 28, 2024
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