Deprecate passing individual tables to amici_import_petab

[dweindl]

and replace deprecated petab.Problem.from_files in amici.petab.cli.import_petab._main.

Fixes #2460

[codecov]

Codecov Report

Attention: Patch coverage is 0% with 13 lines in your changes missing coverage. Please review.

Project coverage is 77.61%. Comparing base (474b473) to head (017ef66).
Report is 22 commits behind head on develop.

Files with missing lines	Patch %	Lines
python/sdist/amici/petab/cli/import_petab.py	0.00%	13 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #2464      +/-   ##
===========================================
- Coverage    77.65%   77.61%   -0.04%     
===========================================
  Files          324      324              
  Lines        20927    20933       +6     
  Branches      1464     1464              
===========================================
- Hits         16250    16247       -3     
- Misses        4674     4683       +9     
  Partials         3        3              

Flag	Coverage Δ
cpp	73.37% <0.00%> (-0.04%)	⬇️
cpp_python	34.08% <0.00%> (-0.01%)	⬇️
petab	36.64% <0.00%> (-0.02%)	⬇️
python	72.15% <0.00%> (-0.04%)	⬇️

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Files with missing lines	Coverage Δ
python/sdist/amici/petab/cli/import_petab.py	0.00% <0.00%> (ø)

... and 3 files with indirect coverage changes

[FFroehlich]

Maybe add tests for both calls?

[dweindl]

Maybe add tests for both calls?

the yaml-based one is used for the benchmark collection, added one for the deprecated call