README.md

FNC-lab codes for Neuropixels data analysis

---

This repository hosts necessary codes for the statistics and visualization in FNC lab neuropixels studies.

Dependencies

• MATLAB (>R2022b)
  • FieldTrip Toolbox
  • Buzsaki lab repository
• Java SE
  • Gephi and GephiToolkit
• Python
  • Snakemake

---

Bleeding edge data pipeline

• The workflow management system Snakemake manages the essential code for evaluating submitted or publicly presented data.

• The Snakefile with the default rules could be found at {repo-root}/jpsth/Snakefile.

• The codes are currently in active development, occasional errors and regressions are expected.