setup R for openhands

[zachmayer]

No description provided.

[coderabbitai]

Walkthrough

The pull request modifies the workflow configuration in .github/workflows/openhands-resolver.yml. The job setup-r-environment has been renamed to openhands-resolver, and it now runs on the ubuntu-latest environment. The previous job call-openhands-resolver has been removed, and its functionality has been integrated directly into the openhands-resolver job. The parameters for the OpenHands resolver are still passed in, but secrets are now provided through the env context instead of the secrets context.

Changes

File	Change Summary
.github/workflows/openhands-resolver.yml	Job renamed from setup-r-environment to openhands-resolver, removed call-openhands-resolver, integrated its steps directly, and changed secrets context to env.

Possibly related PRs

• openhands issue resolver #343: The main PR modifies the job previously named setup-r-environment, which is directly related to the job call-openhands-resolver introduced in this PR, indicating a connection in workflow management for OpenHands.
• setup R for openhands #354: The main PR renames and modifies the setup-r-environment job, which was added in this PR, showing a direct relationship in the workflow configuration changes.

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[coderabbitai]

Actionable comments posted: 1

📜 Review details

Configuration used: .coderabbit.yaml
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between f343a9e and 94e152d.

📒 Files selected for processing (1)

• .github/workflows/openhands-resolver.yml (2 hunks)

🧰 Additional context used

📓 Learnings (1)

.github/workflows/openhands-resolver.yml (1)

Learnt from: zachmayer
PR: zachmayer/caretEnsemble#354
File: .github/workflows/openhands-resolver.yml:32-36
Timestamp: 2024-11-29T20:50:11.885Z
Learning: The `cache` option is not supported by `r-lib/actions/setup-r@v2`.

🔇 Additional comments (2)

.github/workflows/openhands-resolver.yml (2)

21-24: LGTM! Job configuration follows best practices.

The job definition is well-structured with appropriate access control and uses the latest Ubuntu runner.

---

Line range hint 26-35: Verify R package dependencies.

The R setup steps look good and follow r-lib's recommended practices. However, let's verify if all required R packages are listed in the project's DESCRIPTION file.

✅ Verification successful

R package dependencies are properly defined and match the workflow requirements

The DESCRIPTION file shows all necessary dependencies are properly declared:

• Core dependency caret is listed under Imports
• Testing packages like testthat and rcmdcheck dependencies are covered under Suggests
• The R version requirement (>= 4.1.0) aligns with using the latest release version in the workflow

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check for R package dependencies in DESCRIPTION file
# Expect: Find a DESCRIPTION file with package dependencies

# Look for DESCRIPTION file
fd "^DESCRIPTION$" --type f --exec cat {} \;

Length of output: 1424