Aquaria

Simplifying the generation of insight from protein structures

---

Pre Installation

• (MacOS Only) install command line tools for Mac Start XCode. Go to XCode/Preferences. Click the "Downloads" tab. Click "Components". Click "Install" on the command line tools line.

• Install npm and nodejs from http://nodejs.org/ curl -L https://npmjs.org/install.sh | sudo sh

sudo npm cache clean -f sudo npm install -g n

Aquaria is using node version v0.10.33 sudo n 0.10.33

• install browserify sudo npm install -g [email protected]

---

Installation

• git clone https://github.com/ODonoghueLab/Aquaria.git

• load node prereqs Open Terminal and cd to root of Aquaria directory run:

  • npm install
  • npm run setupTemplates
  • npm run updateJars
  • ./build.sh you may edit the site.json and change the port if required.

---

Operation

• Start Stop Server Open Terminal and cd to root of Aquaria directory run either start.sh or stop.sh

---

Changing the code

• Aquaria uses requirejs to handle both server and client dependencies. After making changes to the client javascript files, run build.sh to compile the client files into 1 large file stored as public/javascripts/aquaria.js