About

This repository contains zsh shell completion scripts for bioinformatics tools.

List of supported bioinformatics commands

Please refer to the list.

Install

1. Add following lines to .zshrc. This script adds ~/.zsh/zsh-completions-bio/completion to zsh's search paths, and sets the color of completion suggestions.

## --------------------------------------------------------------------------
##   zsh-completions-bio
fpath=( ~/.config/zsh/zsh-completions-bio/completions "${fpath[@]}" )
autoload -Uz compinit; compinit

zstyle ':completion:*' use-cache on
zstyle ':completion:*' cache-path ~/.config/zsh/cache

## Colors of completion suggestions
## https://stackoverflow.com/questions/23152157/how-does-the-zsh-list-colors-syntax-work
##
## 256 color palette
## 1;38;5;142  ... 256 color palette (142 )  # https://www.ditig.com/256-colors-cheat-sheet
##
## CLI_COLOR
##  0 ... default
## 30 ... black
## 31 ... red      91 ... light red
## 32 ... green    92 ... light green
## 33 ... yellow   93 ... light yellow
## 34 ... blue     94 ... light blue
## 35 ... magenta  95 ... light magenta
## 36 ... cyan     96 ... light cyan
## 37 ... white
## 41   ... red (background)
## 1;31 ... red (bold)
##
zstyle ':completion:*' list-colors '=(#b)*(--)( *)=37=1;38;5;103=1;38;5;142' '=*=0'
## --------------------------------------------------------------------------

2. Clone this repository under ~/.config/zsh:

mkdir -p ~/.config/zsh
cd ~/.config/zsh
git clone https://github.com/yamaton/zsh-completions-bio.git