Merge pull request #27 from VasudhaJha/feature/export-all-files

fix readme data imports
xinglab-ai · Jul 14, 2023 · d564612 · d564612
2 parents 28fad7e + 92981c9
commit d564612
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Showing 3 changed files with 7 additions and 6 deletions.
diff --git a/README.md b/README.md
@@ -72,15 +72,15 @@ Y_time = np.squeeze(gt_data['newGT'])
 
 outGenoTraj=compute_genoTraj(data)
 
-dx = sio.loadmat('MOIdata/dataBaronX.mat')
+dx = sio.loadmat('dataBaronX.mat')
 data=dx['dataBaron']
-dx = sio.loadmat('MOIdata/dataMuraroX.mat')
+dx = sio.loadmat('dataMuraroX.mat')
 data2=dx['dataMuraro']
-dx = sio.loadmat('MOIdata/dataScapleX.mat')
+dx = sio.loadmat('dataScapleX.mat')
 data3=dx['dataScaple']
-dx = sio.loadmat('MOIdata/dataWangX.mat')
+dx = sio.loadmat('dataWangX.mat')
 data4=dx['dataWang']
-dx = sio.loadmat('MOIdata/dataXinX.mat')
+dx = sio.loadmat('dataXinX.mat')
 data5=dx['dataXin']
 
 resVis=compute_genoMOI(data, data2, data3, data4, data5, colNum=44, rowNum=44)

diff --git a/requirements.txt b/requirements.txt
@@ -1,4 +1,5 @@
 anndata
+bbknn
 numpy
 phate
 pot

diff --git a/setup.py b/setup.py
@@ -5,7 +5,7 @@
 
 setup(
     name="genomap",
-    version="1.0.8",
+    version="1.0.9",
     author="Md Tauhidul Islam",
     author_email="[email protected]",
     description="Genomap converts tabular gene expression data into spatially meaningful images.",