misc: remove mentions of black formatter

[superlopuh]

A bit of cleanup.

1. exclude ruff transition from git blame
2. remove make black
3. clean up comments
4. Makefile now also has 88 column width, because why not
5. Add jupyter notebooks and type stubs to ruff formatted file list

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 89.85%. Comparing base (996f649) to head (449afd4).
Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #3032   +/-   ##
=======================================
  Coverage   89.85%   89.85%           
=======================================
  Files         413      413           
  Lines       51852    51852           
  Branches     8006     8006           
=======================================
+ Hits        46592    46594    +2     
+ Misses       3970     3969    -1     
+ Partials     1290     1289    -1     

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[alexarice]

Can't find any usages of the word black in the repository so looks good

[alexarice]

Is it worth having a "make ruff" replacement for this or is it just unnecessary?

[superlopuh]

I initially changed this to make format but then I thought that was silly since it's the same number of characters and doesn't seem particularly useful.