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# Conda命令清理pkgs,一次完美的“瘦身”之旅

> 随着Python编程学习的不断深入,Anaconda所占的空间也越来越大,这几天在弄预测器部署到云服务器的事情,因为`内存空间不足`的问题导致我配置环境的依赖包根据安装不了,所以开始萌生出`把服务器瘦身`的冲动。
下图是清理前的服务器状态:

![](../../../images/20220506-01-清理pkgs.png)

我们发现,随着部署服务器上的预测器越来越多,可用的空间越来越少了!!!那这么少的空间,我咋部署我的呢,着实头疼,问了实验室好几个人,都没办法解决,就更头疼了,也是很巧,睡了一觉起来,今早就解决了这个问题,着实很开心 ☘️ 撒花 🎉

效果如下图所示,成功将内存使用率降到了84%。

![](../../../images/20220506-02-清理pkgs.png)

下面来介绍一下如何操作的吧:

首先,查阅资料发现,Anaconda文件夹下有一个pkgs文件夹,里面存放着各种包的使用过的各个版本及其压缩包,当你执行更新操作的时候,新版本和旧版本都会存在在pkgs文件夹里,同时我们知道,真正对Anaconda有用的文件夹是`lib/site-packages`,所以我大胆猜测,pkgs文件夹下的文件能删!!!

于是萌生一种想法:执行以下命令操作:

```shell
# 删除pkgs
rm -rf pkgs
# 创建pkgs文件夹
mkdir pkgs
```

但是,想想这样太粗暴了,万一删出问题,可就goodbye了 💥 毕竟云服务器是课题组的共有财产,删出问题可不得了哇!于是找到了一种稳妥的删除方式,亲测有效,如下:

那就是使用`conda`命令进行清理,有如下3种方式:

```shell
conda clean -p # 删除没有使用的包(非常推荐,我就是用的这种)
conda clean -t # 清理缓存的压缩包文件,可以试试,我没操作这个
conda clean -y -all # 删除全部的安装包及cache,可以试试,我没操作这个
```

推荐直接使用`conda clean -p`即可,这个命令已经可以清理出很大的空间了

执行这条命令:`conda clean -p`,会自动检查Anaconda中哪些包没有在包缓存中被硬依赖到其他地方:

![](../../../images/20220506-03-清理pkgs.png)

我们会看到,总共检查到足足5.13G的缓存!!赶紧输入`y`,迫切的将其删除~~

![](../../../images/20220506-04-清理pkgs.png)

然后就清理出5.13G的可用空间,真香,然后顺顺利利的将预测器部署到了服务器上,希望可以帮助到你 ✨

下面附一张手画的预测器主页面图,作为本文的结尾,希望可以给你以启迪,给你带来帮助 🌈

![](../../../images/20220506-05-清理pkgs.png)













43 changes: 43 additions & 0 deletions Python/Flask/Solve_Problems/构建预测器遇到的问题.md
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# 基于Flask构建预测器遇到的问题

> 本文操作基于编程平台:PyCharm,如使用其他编程平台,请根据实际情况进行解决。
## 问题一:预测器报错:OSError: [Errno 48] Address already in use

> 昨天在构建`pSuc-EDBAM`预测器的时候,预测器正在运行时,准备关闭PyCharm,这时提示下图所示,不小心点到了`Disconnect`,重新运行报错:`OSError: [Errno 48] Address already in use`
![](../../../images/20220505-01-pSuc-EDBAM.png)

重新运行报错:

![](../../../images/20220505-02-pSuc-EDBAM.png)

🍀 那如何解决呢?请看下面:

使用`lsof -i:端口号`可以查看占用某个端口的进程,我们在基于Flask框架构建预测器的时候,默认网址:127.0.0.1:5000,端口号是5000,所以解决方案如下:

步骤一:打开PyCharm中Terminal命令行,输入:`lsof -i:5000`,查看占用5000端口的PID;

步骤二:然后执行`kill -9 PID`即可杀掉该进程。

重新运行程序,即可运行成功:

![](../../../images/20220505-03-pSuc-EDBAM.png)

## 问题二:云服务器出现-bash: fork: retry: Resource temporarily unavailable错误

> 在云服务器上操作时,出现`-bash: fork: retry: Resource temporarily unavailable`错误,继而登陆不了服务器,The server refused to start a shell.
起因是啥呢,是因为我在登陆服务器后执行ls命令,导致`-bash: fork: retry: Resource temporarily unavailable`

![](../../../images/20220505-04-pSuc-EDBAM.png)

本质原因就是因为Linux操作系统无法创建更多进程,导致出错,所以我需要解决的就是扩大用户的进程,就要去修改Linux最大进程数:

步骤一:通过**ulimit -a**来查看当前Linux系统的一些系统参数,然后发现默认的`max user processes`只有1024

步骤二:执行` sudo vim /etc/security/limits.d/90-nproc.conf`操作,修改`max user processes`的值,我把它修改成了4096,看你还嫌少不,哼~

![](../../../images/20220505-05-pSuc-EDBAM.png)

还好,最后pSuc-EDBAM预测器构建成功了,fighting!希望可以帮助到你 ☘️
34 changes: 34 additions & 0 deletions ToolBox/Gitpod在线IDE.md
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# Gitpod——强大的在线IDE

> Gitpod是一个强大的在线IDE(集成编程环境),提供了VSCode风格的编辑器,允许在线编写代码完成开发。Gitpod基于容器技术,可以帮助我们一键编译、构建、运行任何Github项目,而且每个项目的运行都是相互隔离的,随用随创建、用完可随时回收,非常灵活。
界面如下图所示:

![](../images/20220511-01-Gitpod.png)

注:如果是看中了一个Github项目,但是不想在本地去搭建各种环境去查看项目的运行效果,那么最好的方式就可以利用Gitpod来构建在线的IDE。

![](../images/20220511-02-Gitpod.png)

Gitpod中的IDE基于Theia,这是一个开源项目,我们可以将其视为VS Code的在线版本。Theia是一个真正的开源项目,由Eclipse Foundation托管,由TypeFox,Ericsson,Red Hat,Arm等的各类工程师开发。Theia基于VS Code及其语言服务协议,支持大多数主流编程语言。

### 如何使用Gitpod

(示例)在Chrome浏览器中输入:

https://gitpod.io/#/github.com/wugenqiang/pSuc-EDBAM

注意,`github.com/wugenqiang/pSuc-EDBAM`代表你要运行的Github项目。

即可进入到相应的运行界面啦,具体的可以自行操作看看。

### 如何运行项目

`pSuc-EDBAM`举例:

这个项目里面有一个`predict.py`文件,这是我构建好的预测琥珀酰化的文件,在命令行执行`python predict.py`即可运行,得出想要的预测结果。

![](../images/20220511-03-Gitpod.png)

希望可以帮助到你 ☘️

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# VSCode安装
# VSCode快速下载

Visual Studio Code 通过官网下载老是下载很慢,或者直接中断,比如会显示如下:
![在这里插入图片描述](https://img-blog.csdnimg.cn/20210304134656705.png?x-oss-process=image/watermark,type_ZmFuZ3poZW5naGVpdGk,shadow_10,text_aHR0cHM6Ly9ibG9nLmNzZG4ubmV0L3d1Z2VucWlhbmc=,size_16,color_FFFFFF,t_70)
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26 changes: 26 additions & 0 deletions ToolBox/VSCode/02-修改VSCode底部状态栏颜色.md
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# 修改VSCode底部状态栏颜色

Step 1: 首先,点击左下角齿轮⚙️,点击设置;

Step 2: 搜索:`workbench.colorCustomizations`,然后点击在`settings.json中编辑`;

![](../../images/20220516-01-VSCode.png)

Step 3: 修改`settings.json`内容,在 `workbench.colorCustomizations`中添加三行代码即可,颜色自定义,设置为自己喜欢的就可以:

```json
"statusBar.background": "#333333",
"statusBar.noFolderBackground": "#333333",
"statusBar.debuggingBackground": "#333333"
```

如图所示添加:

![](../../images/20220516-02-VSCode.png)

效果图如下:

![](../../images/20220516-03-VSCode.png)

不知道怎么修改的可以来试试看,希望可以帮助到你 ☘️

14 changes: 14 additions & 0 deletions ToolBox/git_use_method.md
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# Git推送至GitHub和下载至本地



```
git init
git pull https://github.com/wugenqiang/pSuc-EDBAM.git
git add .
git commit -m "first commit"
git branch -M main
git remote add origin https://github.com/wugenqiang/pSuc-EDBAM.git
git push -u origin main
```



# 1 创建一个空目录,并初始化

```shell
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90 changes: 45 additions & 45 deletions index.html
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<head>
<meta charset="UTF-8">
<title>ETS' NoteBook - By Mr.Wu - 微信公众号:码客趣分享 🌹</title>
<link rel="icon" href="https://cdn.jsdelivr.net/gh/wugenqiang/StaticRepo/images/favicon.ico">
<link rel="icon" href="https://notebook.js.org/images/favicon.ico">
<meta http-equiv="X-UA-Compatible" content="IE=edge,chrome=1" />
<meta name="description" content="Description">
<meta name="viewport" content="width=device-width, user-scalable=no, initial-scale=1.0, maximum-scale=1.0, minimum-scale=1.0">
Expand All @@ -15,17 +15,17 @@
<!-- 百度站点收录-->
<meta name="baidu-site-verification" content="SZyWUIzWiU" />

<link rel="stylesheet" href="//cdn.jsdelivr.net/npm/docsify/themes/vue.css">
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<link rel="stylesheet" href="https://notebook.js.org/plugin/css/me.css">

<style>

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.markdown-section pre:before {
content: '';
display: block;
background: url(https://gitee.com/wugenqiang/PictureBed/raw/master/images01/20200716201955.png);
background: url(https://notebook.js.org/images/20220519-02-myinfo.png);
height: 30px;
background-size: 40px;
background-repeat: no-repeat;
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<div class="Tencent_code">
<h4>关注作者公众号</h4>
<p style="font-size: 12px;">万千小伙伴陪你一起学</p>
<img src="https://cdn.jsdelivr.net/gh/wugenqiang/PictureBed/images01/20200808182633.jpg" alt="EnjoyToShare" />
<img src="https://notebook.js.org/images/20220519-01-myinfo.jpg" alt="EnjoyToShare" />
</div>
</div>
</div>
Expand Down Expand Up @@ -436,28 +436,28 @@ <h4>关注作者公众号</h4>

}
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$(document).ready(function () {
$.goup({
Expand All @@ -471,41 +471,41 @@ <h4>关注作者公众号</h4>
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<script src="https://notebook.js.org/plugin/prism-python.js"></script>
<script src="https://notebook.js.org/plugin/js/prism-yaml.js"></script>
<script src="https://notebook.js.org/plugin/js/prism-go.js"></script>
<script src="https://notebook.js.org/plugin/js/prism-matlab.js"></script>

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<script>
((window.gitter = {}).chat = {}).options = {
room: 'enjoytoshare/community'
};
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<script src="https://notebook.js.org/plugin/click_heart.js"></script>

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<script src="https://cdn.jsdelivr.net/gh/wugenqiang/NoteBook@master/plugin/sweetalert.min.js"></script>
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document.body.oncopy = function () {
swal("复制成功 🎉",
Expand All @@ -514,7 +514,7 @@ <h4>关注作者公众号</h4>
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Expand Down Expand Up @@ -581,10 +581,10 @@ <h4>关注作者公众号</h4>
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<script async src="https://notebook.js.org/plugin/js/busuanzi.pure.mini.js"></script>

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<script src="https://notebook.js.org/plugin/js/ga.min.js"></script>

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