Updating MYNN-SFC

[joeolson42]

The purpose for this PR is to update the refactored MYNN surface layer scheme, which has now been more fully debugged and has been tested in both WRF and MPAS.

TYPE: enhancement

KEYWORDS: MYNN-SFC version 6.0.0 refactored HRRR

SOURCE: Joseph B. Olson

DESCRIPTION OF CHANGES:
The Main Problem:
This scheme was refactored starting from the CCPP version, which has a few distinctions from WRF/MPAS that required further work to fully integrate into both WRF and MPAS.

Solutions:

1. Corrected the conversions of mixing ratio/specific humidity.
2. added output of variables qgh and cqs, which are needed in some mode frameworks for some configurations
3. Some tuning was done for sf_mynn_sfcflux_land = 1 to work better when initializing off of RAP/HRRR/RRFS and using RUC LSM. If using Noah LSM, it will default to the Chen et al. (variable Czil) approach.
4. Added the infrastructure for bathymetry-dependent z0, which is expected to be compared with other approaches (possibly from WFIP3 data) and possibly tweaked in the near future.
5. Added automated CI testing in "MYNN-SFC/tests", which further help check for code errors for every PR to the MYNN-SFC repository. This helped find a few bugs in relatively unused configurations.

LIST OF MODIFIED FILES: list of changed files (use git diff --name-status master to get formatted list)
M phys/MYNN-SFC
M phys/module_surface_driver.F

TESTS CONDUCTED:

1. Do mods fix problem? Yes, case study testing with debug flags active.
2. Are the Jenkins tests all passing?

[joeolson42]

Test Type              | Expected  | Received |  Failed
= = = = = = = = = = = = = = = = = = = = = = = =  = = = =
Number of Tests        : 23           24
Number of Builds       : 60           57
Number of Simulations  : 158           150        0
Number of Comparisons  : 95           86        0

Failed Simulations are: 
None
Which comparisons are not bit-for-bit: 
None

[weiwangncar]

@joeolson42 Will do a separate PR for depend.common.

[dudhia]

Not sure the depend.common change is needed anyway. I think that is only for dependencies outside the phys directory. GFL is already listed in the phys/Makefile.

[islas]

Not sure the depend.common change is needed anyway. I think that is only for dependencies outside the phys directory. GFL is already listed in the phys/Makefile.

The GFL PR that went in did not properly set up the make dependencies. The depend.common has the object dependencies for the whole project. That said, the fixes to GFL should be done in a separate PR

[dudhia]

OK, I see depend.common may have some outdated gf files listed.

[joeolson42]

Test Type              | Expected  | Received |  Failed
= = = = = = = = = = = = = = = = = = = = = = = =  = = = =
Number of Tests        : 23           24
Number of Builds       : 60           57
Number of Simulations  : 158           150        0
Number of Comparisons  : 95           86        0

Failed Simulations are: 
None
Which comparisons are not bit-for-bit: 
None

[islas]

I think the PR description TYPE section should also be updated to only select one thing.

[weiwangncar]

I think the PR description TYPE section should also be updated to only select one thing.

@joeolson42 @islas I have made the change.

addressed

[islas]

Updated PR description