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gdcm/3.2.1 package update

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gdcm/3.2.1 package update #65851

gdcm/3.2.1 package update
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Chainguard Internal / elastic-build (eco-2-28) completed Sep 11, 2025 in 2m 6s

Failed to build APKs

Build ID: 98cdd9ae-805e-44cc-8c81-84737284f075
Error: failed to build gdcm: building group: pod failed: build failed
did not test because building group: pod failed: build failed

Details

x86_64 Logs

Click to expand 
parsed env
configuring puller identity "e2fa069c57acc83f3f2748a8bed50e44dff064dc/dcb8fb2f15475910"...
running command chainctl [auth login --audience apk.cgr.dev --identity e2fa069c57acc83f3f2748a8bed50e44dff064dc/dcb8fb2f15475910]
Successfully exchanged token.
Valid! Id: e2fa069c57acc83f3f2748a8bed50e44dff064dc/dcb8fb2f15475910
Updates are available for chainctl (current version: 0.2.138; latest: 0.2.140). To install, please run:
    $ chainctl update
command "chainctl" completed successfully
puller identity configured successfully
puller identity configured successfully
running build...
running command melange [build gdcm.yaml --gcplog --source-dir gdcm --arch x86_64 --arch=x86_64 --env-file=build-x86_64.env --namespace=chainguard --pipeline-dir=./pipelines --out-dir=./packages/ --runner=bubblewrap --repository-append=https://apk.cgr.dev/chainguard --repository-append=https://apk.cgr.dev/chainguard-private --repository-append=https://apk.cgr.dev/chainguard-2.28 --repository-append=https://apk.cgr.dev/chainguard-2.28-presubmit/9c790386e71e9345061e7a9fa7132d030ffeb4a6 --package-append=ct-manylinux-2.28 --package-append=gcc-14-default --repository-append=https://apk.cgr.dev/chainguard-2.28-presubmit/9c790386e71e9345061e7a9fa7132d030ffeb4a6 --git-repo-url=https://github.com/wolfi-dev/os]
melange version  with runner bubblewrap building gdcm.yaml at commit 9c790386e71e9345061e7a9fa7132d030ffeb4a6 for arches [amd64]
melange v0.31.3 with runner bubblewrap is building:
populating workspace /tmp/melange-workspace-4233917485 from gdcm
image configuration:
  contents:
    build repositories: [https://apk.cgr.dev/chainguard https://apk.cgr.dev/chainguard-2.28 https://apk.cgr.dev/chainguard-2.28-presubmit/9c790386e71e9345061e7a9fa7132d030ffeb4a6 https://apk.cgr.dev/chainguard-private]
    runtime repositories: []
    repositories: []
    keyring:      []
    packages:     [binutils=2.45-r1 build-base=1-r8 busybox=1.37.0-r50 ca-certificates-bundle=20250619-r6 cmake=4.1.1-r0 ct-manylinux-2.28=1.27.0-r2 cyrus-sasl=2.1.28-r44 gcc-14-default=14.3.0-r8 gcc-14=14.3.0-r8 gdbm=1.26-r1 gfortran-14=14.3.0-r8 git=2.51.0-r1 glibc-dev=2.42-r0 glibc-locale-posix=2.42-r0 glibc=2.42-r0 gmp=6.3.0-r8 heimdal-libs=7.8.0-r42 isl=0.27-r4 jsoncpp=1.9.6-r2 keyutils-libs=1.6.3-r37 krb5-conf=1.0-r7 krb5-libs=1.22.1-r1 ld-linux=2.42-r0 libacl1=2.3.2-r53 libarchive=3.8.1-r2 libbrotlicommon1=1.1.0-r7 libbrotlidec1=1.1.0-r7 libbz2-1=1.0.8-r21 libcom_err=1.47.3-r1 libcrypt1=2.42-r0 libcrypto3=3.5.2-r1 libcurl-openssl4=8.16.0-r0 libexpat1=2.7.1-r3 libgcc=15.2.0-r2 libgfortran-14=14.3.0-r8 libgfortran=15.2.0-r2 libidn2=2.3.8-r3 libldap=2.6.10-r5 liblz4-1=1.10.0-r6 libnghttp2-14=1.67.0-r0 libpcre2-8-0=10.46-r0 libpsl=0.21.5-r6 libquadmath=15.2.0-r2 librhash0=1.4.6-r2 libssl3=3.5.2-r1 libstdc++-14-dev=14.3.0-r8 libstdc++-14=14.3.0-r8 libstdc++=15.2.0-r2 libunistring=1.3-r4 libuv=1.51.0-r2 libverto=0.3.2-r6 libxcrypt-dev=4.4.38-r4 libxcrypt=4.4.38-r4 libzstd1=1.5.7-r3 linux-headers=6.16.6-r0 make=4.4.1-r8 mpc=1.3.1-r7 mpfr=4.2.2-r2 ncurses-terminfo-base=6.5_p20250621-r1 ncurses=6.5_p20250621-r1 nss-db=2.42-r0 nss-hesiod=2.42-r0 openssf-compiler-options=20240627-r27 patch=2.8-r3 pkgconf=2.5.1-r1 posix-cc-wrappers=1-r7 readline=8.3-r1 samurai=1.2-r3 scanelf=1.3.8-r5 sqlite-libs=3.50.4-r1 wolfi-baselayout=20230201-r23 xz=5.8.1-r2 zlib=1.3.1-r51]
  accounts:
    runas:  
    users:
      - uid=1000(build) gid=1000
    groups:
      - gid=1000(build) members=[build]
auth configured for: []
installing libgcc (15.2.0-r2)
installing wolfi-baselayout (20230201-r23)
installing ca-certificates-bundle (20250619-r6)
installing glibc-locale-posix (2.42-r0)
installing glibc (2.42-r0)
installing ld-linux (2.42-r0)
installing libstdc++ (15.2.0-r2)
installing libzstd1 (1.5.7-r3)
installing binutils (2.45-r1)
installing libquadmath (15.2.0-r2)
installing posix-cc-wrappers (1-r7)
installing gmp (6.3.0-r8)
installing isl (0.27-r4)
installing mpfr (4.2.2-r2)
installing mpc (1.3.1-r7)
installing zlib (1.3.1-r51)
installing libxcrypt (4.4.38-r4)
installing libxcrypt-dev (4.4.38-r4)
installing nss-db (2.42-r0)
installing nss-hesiod (2.42-r0)
installing linux-headers (6.16.6-r0)
installing glibc-dev (2.42-r0)
installing libstdc++-14 (14.3.0-r8)
installing libstdc++-14-dev (14.3.0-r8)
installing openssf-compiler-options (20240627-r27)

aarch64 Logs

Click to expand 
parsed env
configuring puller identity "e2fa069c57acc83f3f2748a8bed50e44dff064dc/dcb8fb2f15475910"...
running command chainctl [auth login --audience apk.cgr.dev --identity e2fa069c57acc83f3f2748a8bed50e44dff064dc/dcb8fb2f15475910]
Successfully exchanged token.
Valid! Id: e2fa069c57acc83f3f2748a8bed50e44dff064dc/dcb8fb2f15475910
Updates are available for chainctl (current version: 0.2.138; latest: 0.2.140). To install, please run:
    $ chainctl update
command "chainctl" completed successfully
puller identity configured successfully
puller identity configured successfully
running build...
running command melange [build gdcm.yaml --gcplog --source-dir gdcm --arch aarch64 --arch=aarch64 --env-file=build-aarch64.env --namespace=chainguard --pipeline-dir=./pipelines --out-dir=./packages/ --runner=bubblewrap --repository-append=https://apk.cgr.dev/chainguard --repository-append=https://apk.cgr.dev/chainguard-private --repository-append=https://apk.cgr.dev/chainguard-2.28 --repository-append=https://apk.cgr.dev/chainguard-2.28-presubmit/9c790386e71e9345061e7a9fa7132d030ffeb4a6 --package-append=ct-manylinux-2.28 --package-append=gcc-14-default --repository-append=https://apk.cgr.dev/chainguard-2.28-presubmit/9c790386e71e9345061e7a9fa7132d030ffeb4a6 --git-repo-url=https://github.com/wolfi-dev/os]
melange version  with runner bubblewrap building gdcm.yaml at commit 9c790386e71e9345061e7a9fa7132d030ffeb4a6 for arches [arm64]
melange v0.31.3 with runner bubblewrap is building:
populating workspace /tmp/melange-workspace-2088640780 from gdcm
image configuration:
  contents:
    build repositories: [https://apk.cgr.dev/chainguard https://apk.cgr.dev/chainguard-2.28 https://apk.cgr.dev/chainguard-2.28-presubmit/9c790386e71e9345061e7a9fa7132d030ffeb4a6 https://apk.cgr.dev/chainguard-private]
    runtime repositories: []
    repositories: []
    keyring:      []
    packages:     [binutils=2.45-r1 build-base=1-r8 busybox=1.37.0-r50 ca-certificates-bundle=20250619-r6 cmake=4.1.1-r0 ct-manylinux-2.28=1.27.0-r2 cyrus-sasl=2.1.28-r44 gcc-14-default=14.3.0-r8 gcc-14=14.3.0-r8 gdbm=1.26-r1 gfortran-14=14.3.0-r8 git=2.51.0-r1 glibc-dev=2.42-r0 glibc-locale-posix=2.42-r0 glibc=2.42-r0 gmp=6.3.0-r8 heimdal-libs=7.8.0-r42 isl=0.27-r4 jsoncpp=1.9.6-r2 keyutils-libs=1.6.3-r37 krb5-conf=1.0-r7 krb5-libs=1.22.1-r1 ld-linux=2.42-r0 libacl1=2.3.2-r53 libarchive=3.8.1-r2 libbrotlicommon1=1.1.0-r7 libbrotlidec1=1.1.0-r7 libbz2-1=1.0.8-r21 libcom_err=1.47.3-r1 libcrypt1=2.42-r0 libcrypto3=3.5.2-r1 libcurl-openssl4=8.16.0-r0 libexpat1=2.7.1-r3 libgcc=15.2.0-r2 libgfortran-14=14.3.0-r8 libgfortran=15.2.0-r2 libidn2=2.3.8-r3 libldap=2.6.10-r5 liblz4-1=1.10.0-r6 libnghttp2-14=1.67.0-r0 libpcre2-8-0=10.46-r0 libpsl=0.21.5-r6 libquadmath=15.2.0-r2 librhash0=1.4.6-r2 libssl3=3.5.2-r1 libstdc++-14-dev=14.3.0-r8 libstdc++-14=14.3.0-r8 libstdc++=15.2.0-r2 libunistring=1.3-r4 libuv=1.51.0-r2 libverto=0.3.2-r6 libxcrypt-dev=4.4.38-r4 libxcrypt=4.4.38-r4 libzstd1=1.5.7-r3 linux-headers=6.16.6-r0 make=4.4.1-r8 mpc=1.3.1-r7 mpfr=4.2.2-r2 ncurses-terminfo-base=6.5_p20250621-r1 ncurses=6.5_p20250621-r1 nss-db=2.42-r0 nss-hesiod=2.42-r0 openssf-compiler-options=20240627-r27 patch=2.8-r3 pkgconf=2.5.1-r1 posix-cc-wrappers=1-r7 readline=8.3-r1 samurai=1.2-r3 scanelf=1.3.8-r5 sqlite-libs=3.50.4-r1 wolfi-baselayout=20230201-r23 xz=5.8.1-r2 zlib=1.3.1-r51]
  accounts:
    runas:  
    users:
      - uid=1000(build) gid=1000
    groups:
      - gid=1000(build) members=[build]
auth configured for: []
installing libgcc (15.2.0-r2)
installing wolfi-baselayout (20230201-r23)
installing ca-certificates-bundle (20250619-r6)
installing glibc-locale-posix (2.42-r0)
installing glibc (2.42-r0)
installing ld-linux (2.42-r0)
installing libstdc++ (15.2.0-r2)
installing libzstd1 (1.5.7-r3)
installing binutils (2.45-r1)
installing posix-cc-wrappers (1-r7)
installing gmp (6.3.0-r8)
installing isl (0.27-r4)
installing mpfr (4.2.2-r2)
installing mpc (1.3.1-r7)
installing zlib (1.3.1-r51)
installing libxcrypt (4.4.38-r4)
installing libxcrypt-dev (4.4.38-r4)
installing nss-db (2.42-r0)
installing nss-hesiod (2.42-r0)
installing linux-headers (6.16.6-r0)
installing glibc-dev (2.42-r0)
installing libquadmath (15.2.0-r2)
installing libstdc++-14 (14.3.0-r8)
installing libstdc++-14-dev (14.3.0-r8)
installing openssf-compiler-options (20240627-r27)
installing gcc-14 (14.3.0-r8)
installing libgfortran-14 (14.3.0-r8)
installing gfortran-14 (14.3.0-r8)
installing libgfortran (15.2.0-r2)
installing gcc-14-default (14.3.0-r8)
installing make (4.4.1-r8)
installing pkgconf (2.5.1-r1)
installing build-base (1-r8)
installing libcrypt1 (2.42-r0)
installing busybox (1.37.0-r50)
installing libacl1 (2.3.2-r53)
installing libbz2-1 (1.0.8-r21)
installing libcrypto3 (3.5.2-r1)
installing libexpat1 (2.7.1-r3)
installing liblz4-1 (1.10.0-r6)
installing xz (5.8.1-r2)
installing libarchive (3.8.1-r2)
installing libbrotlicommon1 (1.1.0-r7)
installing libbrotlidec1 (1.1.0-r7)
installing libcom_err (1.47.3-r1)
installing keyutils-libs (1.6.3-r37)
installing libssl3 (3.5.2-r1)
installing libverto (0.3.2-r6)
installing krb5-conf (1.0-r7)
installing krb5-libs (1.22.1-r1)
installing gdbm (1.26-r1)
installing ncurses-terminfo-base (6.5_p20250621-r1)
installing ncurses (6.5_p20250621-r1)
installing readline (8.3-r1)
installing sqlite-libs (3.50.4-r1)
installing heimdal-libs (7.8.0-r42)
installing cyrus-sasl (2.1.28-r44)
installing libldap (2.6.10-r5)
installing libnghttp2-14 (1.67.0-r0)
installing libunistring (1.3-r4)
installing libidn2 (2.3.8-r3)
installing libpsl (0.21.5-r6)
installing libcurl-openssl4 (8.16.0-r0)
installing jsoncpp (1.9.6-r2)
installing librhash0 (1.4.6-r2)
installing libuv (1.51.0-r2)
installing cmake (4.1.1-r0)
installing ct-manylinux-2.28 (1.27.0-r2)
installing libpcre2-8-0 (10.46-r0)
installing git (2.51.0-r1)
installing patch (2.8-r3)
installing samurai (1.2-r3)
installing scanelf (1.3.8-r5)
running step "git-checkout"
[git checkout] repo='https://github.com/malaterre/GDCM' dest='.' depth='unset' branch='' tag='v3.2.1' expcommit='9db6ec37c65efff07e82aa57be5c65f263ce37b5' recurse='false'
[git checkout] execute: git config --global --add safe.directory /tmp/tmp.ajxYv5
[git checkout] execute: git config --global --add safe.directory /home/build
[git checkout] execute: git clone --quiet --origin=origin --config=user.name=Melange Build [email protected] --config=advice.detachedHead=false --branch=v3.2.1 --depth=1 https://github.com/malaterre/GDCM /tmp/tmp.ajxYv5
[git checkout] execute: cd /tmp/tmp.ajxYv5
[git checkout] tar -c . | tar -C "/home/build" -x
[git checkout] execute: cd /home/build
[git checkout] execute: git config --global --add safe.directory /home/build
[git checkout] execute: git fetch --quiet origin --depth=1 --no-tags +refs/tags/v3.2.1:refs/origin/tags/v3.2.1
[git checkout] execute: git checkout --quiet origin/tags/v3.2.1
[git checkout] tag v3.2.1 is 9db6ec37c65efff07e82aa57be5c65f263ce37b5
running step "patch"
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|// limits header is not included  in upstream
|--- a/Source/MediaStorageAndFileFormat/gdcmImageChangePhotometricInterpretation.h
|+++ b/Source/MediaStorageAndFileFormat/gdcmImageChangePhotometricInterpretation.h
--------------------------
patching file Source/MediaStorageAndFileFormat/gdcmImageChangePhotometricInterpretation.h
Reversed (or previously applied) patch detected!  Assume -R? [n] 
Apply anyway? [n] 
Skipping patch.
Hunk #1 ignored at 16.
1 out of 1 hunk ignored -- saving rejects to file Source/MediaStorageAndFileFormat/gdcmImageChangePhotometricInterpretation.h.rej
done
failed to build package: unable to run package gdcm pipeline: unable to run pipeline: unable to run pipeline: exit status 1
failed to build: command melange failed: exit status 1
build failed: command melange failed: exit status 1

Indexes

https://apk.cgr.dev/chainguard-2.28-presubmit/9c790386e71e9345061e7a9fa7132d030ffeb4a6

❌ Failed Packages

  • ❌ gdcm (error | 1m38s)

Packages

More Observability

Command

cg build log \
  --build-id 98cdd9ae-805e-44cc-8c81-84737284f075 \
  --project prod-eco-8de7 \
  --cluster elastic-pre \
  --namespace pre-eco-2-28 \
  --start 2025-09-11T09:57:18Z \
  --end 2025-09-11T10:11:54Z
View more details on Chainguard Internal