wolfi-dev · dlorenc · Aug 20, 2023 · Aug 18, 2023
diff --git a/R.yaml b/R.yaml
@@ -0,0 +1,133 @@
+# Generated from https://git.alpinelinux.org/aports/plain/community/R/APKBUILD
+package:
+  name: R
+  version: 4.3.1
+  epoch: 0
+  description: Language and environment for statistical computing
+  copyright:
+    - license: ( GPL-2.0-only OR GPL-3.0-only ) AND LGPL-2.1-or-later
+
+environment:
+  contents:
+    packages:
+      - busybox
+      - ca-certificates-bundle
+      - build-base
+      - automake
+      - autoconf
+      - bzip2-dev
+      - curl-dev
+      - gcc
+      - gfortran
+      - icu-dev
+      - libjpeg-turbo
+      - libpng-dev
+      - make
+      - openblas-dev
+      - pcre2-dev
+      - readline-dev
+      - xz-dev
+      - zlib-dev
+      - cairo-dev
+      - openjdk-17
+      - openjdk-17-default-jvm
+      - libxmu-dev
+      - pango-dev
+      - perl
+      - tiff-dev
+      - tzdata
+      - glibc-iconv
+      - glibc-dev
+      - libjpeg-turbo-dev
+      - libice-dev
+      - libgcc
+      - libx11-dev
+
+pipeline:
+  - uses: fetch
+    with:
+      expected-sha256: 8dd0bf24f1023c6f618c3b317383d291b4a494f40d73b983ac22ffea99e4ba99
+      uri: https://cran.r-project.org/src/base/R-4/R-${{package.version}}.tar.gz
+
+  - runs: |
+      r_cv_have_curl728=y \
+      ./configure \
+        --prefix=/usr \
+        --sysconfdir=/etc/R \
+        --localstatedir=/var \
+        --mandir=/usr/share/man \
+        --libdir=/usr/lib \
+        rdocdir=/usr/share/doc/R \
+        rincludedir=/usr/include/R \
+        rsharedir=/usr/share/R \
+        --disable-nls \
+        --enable-R-shlib \
+        --enable-java \
+        --with-blas=openblas \
+        --with-cairo \
+        --with-ICU \
+        --with-jpeglib \
+        --with-lapack \
+        --with-libpng \
+        --with-libtiff \
+        --with-x \
+        --with-tcltk
+
+  - uses: autoconf/make
+
+  - runs: |
+      make -C src/nmath/standalone
+
+  - uses: autoconf/make-install
+
+  - runs: |
+      _rhome="usr/lib/R"
+      ldpath="/$_rhome/lib"
+      destdir="${{targets.destdir}}/$_rhome"
+
+      cd src/nmath/standalone
+      make DESTDIR="${{targets.destdir}}" install
+      cd ../../../
+
+      # Fixup R wrapper script (taken from Arch).
+      rm "$destdir"/bin/R
+      ln -sf /usr/bin/R "$destdir"/bin/R
+
+      # Remove some useless files (COPYING is duplicated, it will be
+      # in -doc, don't worry).
+      rm "$destdir"/COPYING "$destdir"/SVN-REVISION
+
+      mkdir -p "${{targets.destdir}}"/etc/R
+
+      # R apparently ignores --sysconfdir, so we must manually move configs
+      # to /etc/R and make symlinks.
+      cd "$destdir"/etc
+      for f in *; do
+        mv "$f" "${{targets.destdir}}"/etc/R/ && ln -sf /etc/R/$f $f
+      done
+
+  - uses: strip
+
+subpackages:
+  - name: R-mathlib
+    pipeline:
+      - runs: |
+          mkdir -p "${{targets.subpkgdir}}"/usr/lib
+          mv "${{targets.destdir}}"/usr/lib/libRmath.so* "${{targets.subpkgdir}}"/usr/lib
+
+  - name: R-dev
+    pipeline:
+      - uses: split/dev
+    description: R dev
+
+  - name: R-doc
+    pipeline:
+      - uses: split/manpages
+      - runs: |
+          mkdir -p "${{targets.subpkgdir}}"/usr/share/doc/
+          mv "${{targets.destdir}}"/usr/share/doc/* "${{targets.subpkgdir}}"/usr/share/doc/
+    description: R manpages
+
+update:
+  release-monitor:
+    identifier: 4150
diff --git a/openblas.yaml b/openblas.yaml
@@ -0,0 +1,98 @@
+# Generated from https://git.alpinelinux.org/aports/plain/community/openblas/APKBUILD
+package:
+  name: openblas
+  version: 0.3.23
+  epoch: 0
+  description: fast BSD-licensed BLAS based on gotoBLAS2, with LAPACK
+  copyright:
+    - license: BSD-3-Clause
+
+environment:
+  contents:
+    packages:
+      - busybox
+      - ca-certificates-bundle
+      - build-base
+      - automake
+      - autoconf
+      - perl
+      - linux-headers
+      - gfortran
+
+pipeline:
+  - uses: fetch
+    with:
+      expected-sha256: 5d9491d07168a5d00116cdc068a40022c3455bf9293c7cb86a65b1054d7e5114
+      uri: https://github.com/xianyi/OpenBLAS/archive/v${{package.version}}/openblas-${{package.version}}.tar.gz
+
+  - uses: patch
+    with:
+      patches: blas-lapack.patch
+
+  - runs: |
+      _flags="
+        MAJOR_VERSION=3
+        NO_AFFINITY=1
+        NO_STATIC=1
+        USE_OPENMP=0
+        PREFIX=/usr
+        "
+      if [ "${{build.arch}}" = "x86_64" ]; then
+        _flags="$_flags DYNAMIC_ARCH=1"
+        _flags="$_flags TARGET=CORE2"
+      elif [ "${{build.arch}}" = "aarch64" ]; then
+        _flags="$_flags DYNAMIC_ARCH=0"
+        _flags="$_flags TARGET=ARMV8"
+      fi
+
+      builddir=$(pwd)
+      cd ..
+      export CFLAGS=${CFLAGS/-Os/-O2}
+
+      make -C "$builddir" \
+        $_flags CFLAGS="$CFLAGS"
+
+      make -C "$builddir"/interface \
+        $_flags CFLAGS="$CFLAGS" shared-blas-lapack
+
+
+      cd $builddir
+      make $_flags DESTDIR="${{targets.destdir}}" install
+      install -Dm755 interface/liblapack.so.3 \
+        "${{targets.destdir}}"/usr/lib/liblapack.so.3
+      ln -s liblapack.so.3 "${{targets.destdir}}"/usr/lib/liblapack.so
+      install -Dm755 interface/liblapacke.so.3 \
+        "${{targets.destdir}}"/usr/lib/liblapacke.so.3
+      ln -s liblapacke.so.3 "${{targets.destdir}}"/usr/lib/liblapacke.so
+
+      install -Dm 0644 Changelog.txt TargetList.txt USAGE.md \
+        -t "${{targets.destdir}}"/usr/share/doc/${{package.name}}/
+
+  - uses: strip
+
+subpackages:
+  - name: openblas-dev
+    pipeline:
+      - uses: split/dev
+    description: openblas dev
+
+  - name: openblas-doc
+    pipeline:
+      - uses: split/manpages
+    description: openblas manpages
+
+  - name: liblapack
+    pipeline:
+      - runs: |
+          mkdir -p "${{targets.subpkgdir}}"/usr/lib
+          mv "${{targets.destdir}}"/usr/lib/liblapack.so* "${{targets.subpkgdir}}"/usr/lib
+
+  - name: liblapacke
+    pipeline:
+      - runs: |
+          mkdir -p "${{targets.subpkgdir}}"/usr/lib
+          mv "${{targets.destdir}}"/usr/lib/liblapacke.so* "${{targets.subpkgdir}}"/usr/lib
+
+update:
+  github:
+    identifier: xianyi/OpenBLAS
diff --git a/openblas/blas-lapack.patch b/openblas/blas-lapack.patch
@@ -0,0 +1,39 @@
+Patch-Source: https://gitweb.gentoo.org/repo/gentoo.git/plain/sci-libs/openblas/files/openblas-0.3.12-shared-blas-lapack.patch
+--
+diff --git a/interface/Makefile b/interface/Makefile
+index 2ac9663..077ed16 100644
+--- a/interface/Makefile
++++ b/interface/Makefile
+@@ -332,7 +332,7 @@ CCBLAS3OBJS   = \
+ 	cblas_chemm.$(SUFFIX) cblas_cherk.$(SUFFIX) cblas_cher2k.$(SUFFIX) \
+ 	cblas_comatcopy.$(SUFFIX) cblas_cimatcopy.$(SUFFIX)\
+ 	cblas_cgeadd.$(SUFFIX) cblas_cgemmt.$(SUFFIX)
+-	
++
+ CXERBLAOBJ = \
+ 	cblas_xerbla.$(SUFFIX)
+
+@@ -2384,3 +2384,22 @@ cblas_zgeadd.$(SUFFIX) cblas_zgeadd.$(PSUFFIX) : zgeadd.c
+ cblas_xerbla.$(SUFFIX) cblas_xerbla.$(PSUFFIX) : xerbla.c
+ 	$(CC) -c $(CFLAGS) -DCBLAS $< -o $(@F)
+
++#####
++shared-blas-lapack: libblas.so.3 libcblas.so.3 liblapack.so.3 liblapacke.so.3
++
++# The list of prerequisite is created by comparing with NETLIB BLAS public API.
++libblas.so.3: $(SBLAS1OBJS) $(SBLAS2OBJS) $(SBLAS3OBJS) $(DBLAS1OBJS) $(DBLAS2OBJS) $(DBLAS3OBJS) $(CBLAS1OBJS) $(CBLAS2OBJS) $(CBLAS3OBJS) $(ZBLAS1OBJS) $(ZBLAS2OBJS) $(ZBLAS3OBJS) ../kernel/lsame.o ../kernel/scabs1.o ../kernel/dcabs1.o ../driver/others/xerbla.o
++	$(CC) $(LDFLAGS) -shared -o $@ $^ -Wl,-soname,libblas.so.3 -L.. -lopenblas $(EXTRALIB)
++
++libcblas.so.3: $(CSBLAS1OBJS) $(CSBLAS2OBJS) $(CSBLAS3OBJS) $(CDBLAS1OBJS) $(CDBLAS2OBJS) $(CDBLAS3OBJS) $(CCBLAS1OBJS) $(CCBLAS2OBJS) $(CCBLAS3OBJS) $(CZBLAS1OBJS) $(CZBLAS2OBJS) $(CZBLAS3OBJS) ../kernel/lsame.o ../kernel/scabs1.o ../kernel/dcabs1.o ../driver/others/xerbla.o
++	$(CC) $(LDFLAGS) -shared -o $@ $^ -Wl,-soname,libcblas.so.3 -L.. -lopenblas $(EXTRALIB)
++
++# The prerequisites must match the symbols deleted in target delete-duplicate-lapack-objects
++liblapack.so.3: $(SLAPACKOBJS) $(DLAPACKOBJS) $(CLAPACKOBJS) $(ZLAPACKOBJS) ../kernel/lsame.o ../driver/others/xerbla.o
++	$(CC) $(LDFLAGS) -shared -o $@ $^ ../lapack-netlib/SRC/*.o -Wl,-soname,liblapack.so.3 -L.. -lopenblas $(EXTRALIB)
++
++liblapacke.so.3: liblapack.so.3
++	$(CC) $(LDFLAGS) -shared -o $@ `find ../lapack-netlib/LAPACKE -name "*.o"` -Wl,-soname,liblapacke.so.3 -L.. -lopenblas $(EXTRALIB)
++
++clean::
++	rm -f libblas.so.3 libcblas.so.3 liblapack.so.3
+