libmamba/2025.01.02 package update #38633
Closed
Octo STS / elastic-build
failed
Jan 13, 2025 in 5m 50s
Failed to build APKs
Build ID: d69eb3cc-51bd-4bcb-94eb-f7df3e9d2253
Error: testing x86_64/libmamba: test pod failed: test failed
testing aarch64/libmamba: test pod failed: test failed
Details
x86_64 Logs
Click to expand
le-posix (2.40-r3)
installing reproc (14.2.5-r2)
installing libstdc++ (14.2.0-r7)
installing reproc++ (14.2.5-r2)
installing yaml-cpp (0.8.0-r4)
installing libbz2-1 (1.0.8-r9)
installing fmt (11.1.2-r0)
installing zlib (1.3.1-r4)
installing libsolv (0.7.31-r0)
installing libzstd1 (1.5.6-r5)
installing libexpat1 (2.6.4-r0)
installing liblz4-1 (1.10.0-r2)
installing libattr1 (2.5.2-r4)
installing libacl1 (2.3.2-r4)
installing xz (5.6.3-r2)
installing libcrypto3 (3.4.0-r5)
installing libarchive (3.7.7-r1)
installing libssl3 (3.4.0-r5)
installing libunistring (1.3-r1)
installing libidn2 (2.3.7-r3)
installing libpsl (0.21.5-r4)
installing libbrotlicommon1 (1.1.0-r4)
installing libbrotlidec1 (1.1.0-r4)
installing krb5-conf (1.0-r3)
installing libverto (0.3.2-r4)
installing keyutils-libs (1.6.3-r5)
installing libcom_err (1.47.2-r0)
installing krb5-libs (1.21.3-r2)
installing ncurses-terminfo-base (6.5_p20241228-r0)
installing ncurses (6.5_p20241228-r0)
installing readline (8.2.13-r1)
installing sqlite-libs (3.47.2-r0)
installing libxcrypt (4.4.37-r0)
installing libcrypt1 (2.40-r3)
installing heimdal-libs (7.8.0-r7)
installing gdbm (1.24-r1)
installing cyrus-sasl (2.1.28-r5)
installing libevent (2.1.12-r6)
installing libldap (2.6.9-r0)
installing libnghttp2-14 (1.64.0-r1)
installing libcurl-openssl4 (8.11.1-r0)
installing libmamba (2025.01.02-r0)
installing mamba-package (2025.01.02-r0)
installing bash (5.2.37-r2)
installing micromamba (2025.01.02-r0)
installing wolfi-keys (1-r8)
installing apk-tools (2.14.4-r1)
installing busybox (1.37.0-r0)
installing wolfi-base (1-r6)
built image layer tarball as /tmp/apko-temp-3700319651/apko-x86_64.tar.gz
using /tmp/apko-temp-3700319651/apko-x86_64.tar.gz for image layer
OCI layer digest: sha256:22678e4d2049d342fa31e4fa468a2f8495780aad1c7bf793864ab0cae63913d5
OCI layer diffID: sha256:81962b6f1d3b0f715fddac33f265468998396168bd40058d47c1f65e74f92172
saving OCI image locally: apko.local/cache:e8210a2435787de13eaa866b7995e768f8112ed73fb6dabe2329b59a33a88242
skipping local domain tagging apko.local/cache:e8210a2435787de13eaa866b7995e768f8112ed73fb6dabe2329b59a33a88242 as index.docker.io/library/melange:latest
populating workspace /tmp/melange-workspace-3383239646 from libmamba
ImgRef = apko.local/cache:e8210a2435787de13eaa866b7995e768f8112ed73fb6dabe2329b59a33a88242
time="2025-01-13T19:43:21.848846694Z" level=info msg="connecting to shim 4e6de1aa58e3b062a1134fbea614ebb0f7e69ab8c7eb2b59cf7f941802e11ee2" address="unix:///run/containerd/s/b0547ec679aab82ede450e09553c673395d6178776e3eb9841a50584529d5cec" namespace=moby protocol=ttrpc version=3
running the main test pipeline
Version: 1.5.12
Usage: micromamba [OPTIONS] [SUBCOMMAND]
Options:
-h,--help Print this help message and exit
--version
Configuration options:
--rc-file TEXT ... Paths to the configuration files to use
--no-rc Disable the use of configuration files
--no-env Disable the use of environment variables
Global options:
-v,--verbose Set verbosity (higher verbosity with multiple -v, e.g. -vvv)
--log-level ENUM:value in {critical->5,debug->1,error->4,info->2,off->6,trace->0,warning->3} OR {5,1,4,2,6,0,3}
Set the log level
-q,--quiet Set quiet mode (print less output)
-y,--yes Automatically answer yes on prompted questions
--json Report all output as json
--offline Force use cached repodata
--dry-run Only display what would have been done
--download-only Only download and extract packages, do not link them into environment.
--experimental Enable experimental features
Prefix options:
-r,--root-prefix TEXT Path to the root prefix
-p,--prefix TEXT Path to the target prefix
--relocate-prefix TEXT Path to the relocation prefix
-n,--name TEXT Name of the target prefix
Subcommands:
shell Generate shell init scripts
create Create new environment
install Install packages in active environment
update Update packages in active environment
self-update Update micromamba
repoquery Find and analyze packages in active environment or channels
remove Remove packages from active environment
list List packages in active environment
package Extract a package or bundle files into an archive
clean Clean package cache
config Configuration of micromamba
info Information about micromamba
constructor Commands to support using micromamba in constructor
env List environments
activate Activate an environment
run Run an executable in an environment
ps Show, inspect or kill running processes
auth Login or logout of a given host
search Find packages in active environment or channels
Modifying RC file "/root/.bashrc"
Generating config for root prefix �[1m"/root/micromamba"�[0m
Setting mamba executable to: �[1m"/usr/bin/micromamba"�[0m
Adding (or replacing) the following in your "/root/.bashrc" file
# >>> mamba initialize >>>
# !! Contents within this block are managed by 'mamba init' !!
export MAMBA_EXE='/usr/bin/micromamba';
export MAMBA_ROOT_PREFIX='/root/micromamba';
__mamba_setup="$("$MAMBA_EXE" shell hook --shell bash --root-prefix "$MAMBA_ROOT_PREFIX" 2> /dev/null)"
if [ $? -eq 0 ]; then
eval "$__mamba_setup"
else
alias micromamba="$MAMBA_EXE" # Fallback on help from mamba activate
fi
unset __mamba_setup
# <<< mamba initialize <<<
Transaction
Prefix: /root/micromamba
Updating specs:
- python=3.11
- requests
Package Version Build Channel Size
───────────────────────────────────────────────────────────────────────────────
Install:
───────────────────────────────────────────────────────────────────────────────
+ _libgcc_mutex 0.1 conda_forge conda-forge 3kB
+ ld_impl_linux-64 2.43 h712a8e2_2 conda-forge 669kB
+ ca-certificates 2024.12.14 hbcca054_0 conda-forge 157kB
+ python_abi 3.11 5_cp311 conda-forge 6kB
+ libgomp 14.2.0 h77fa898_1 conda-forge 461kB
+ _openmp_mutex 4.5 2_gnu conda-forge 24kB
+ libgcc 14.2.0 h77fa898_1 conda-forge 849kB
+ libstdcxx 14.2.0 hc0a3c3a_1 conda-forge 4MB
+ openssl 3.4.0 h7b32b05_1 conda-forge 3MB
+ libzlib 1.3.1 hb9d3cd8_2 conda-forge 61kB
+ liblzma 5.6.3 hb9d3cd8_1 conda-forge 111kB
+ ncurses 6.5 h2d0b736_2 conda-forge 894kB
+ libgcc-ng 14.2.0 h69a702a_1 conda-forge 54kB
+ libexpat 2.6.4 h5888daf_0 conda-forge 73kB
+ libstdcxx-ng 14.2.0 h4852527_1 conda-forge 54kB
+ libsqlite 3.47.2 hee588c1_0 conda-forge 874kB
+ tk 8.6.13 noxft_h4845f30_101 conda-forge 3MB
+ libxcrypt 4.4.36 hd590300_1 conda-forge 100kB
+ libffi 3.4.2 h7f98852_5 conda-forge 58kB
+ bzip2 1.0.8 h4bc722e_7 conda-forge 253kB
+ readline 8.2 h8228510_1 conda-forge 281kB
+ libuuid 2.38.1 h0b41bf4_0 conda-forge 34kB
+ libnsl 2.0.1 hd590300_0 conda-forge 33kB
+ zstd 1.5.6 ha6fb4c9_0 conda-forge 555kB
+ tzdata 2024b hc8b5060_0 conda-forge 122kB
+ python 3.11.11 h9e4cc4f_1_cpython conda-forge 31MB
+ wheel 0.45.1 pyhd8ed1ab_1 conda-forge 63kB
+ setuptools 75.8.0 pyhff2d567_0 conda-forge 776kB
+ pip 24.3.1 pyh8b19718_2 conda-forge 1MB
+ pycparser 2.22 pyh29332c3_1 conda-forge 110kB
+ hyperframe 6.0.1 pyhd8ed1ab_1 conda-forge 17kB
+ hpack 4.0.0 pyhd8ed1ab_1 conda-forge 29kB
+ pysocks 1.7.1 pyha55dd90_7 conda-forge 21kB
+ charset-normalizer 3.4.1 pyhd8ed1ab_0 conda-forge 47kB
+ idna 3.10 pyhd8ed1ab_1 conda-forge 50kB
+ certifi 2024.12.14 pyhd8ed1ab_0 conda-forge 162kB
+ h2 4.1.0 pyhd8ed1ab_1 conda-forge 52kB
+ brotli-python 1.1.0 py311hfdbb021_2 conda-forge 350kB
+ cffi 1.17.1 py311hf29c0ef_0 conda-forge 302kB
+ zstandard 0.23.0 py311hbc35293_1 conda-forge 418kB
+ urllib3 2.3.0 pyhd8ed1ab_0 conda-forge 100kB
+ requests 2.32.3 pyhd8ed1ab_1 conda-forge 59kB
Summary:
Install: 42 packages
Total download: 50MB
───────────────────────────────────────────────────────────────────────────────
Confirm changes: [Y/n]
Transaction starting
aarch64 Logs
Click to expand
────────────────────────────────────────────────────────────
Install:
──────────────────────────────────────────────────────────────────────────────────
+ ld_impl_linux-aarch64 2.43 h80caac9_2 conda-forge 698kB
+ ca-certificates 2024.12.14 hcefe29a_0 conda-forge 157kB
+ libgomp 14.2.0 he277a41_1 conda-forge 464kB
+ python_abi 3.11 5_cp311 conda-forge 6kB
+ _openmp_mutex 4.5 2_gnu conda-forge 24kB
+ libgcc 14.2.0 he277a41_1 conda-forge 535kB
+ libstdcxx 14.2.0 h3f4de04_1 conda-forge 4MB
+ openssl 3.4.0 hd08dc88_1 conda-forge 3MB
+ liblzma 5.6.3 h86ecc28_1 conda-forge 124kB
+ ncurses 6.5 ha32ae93_2 conda-forge 928kB
+ libzlib 1.3.1 h86ecc28_2 conda-forge 67kB
+ libgcc-ng 14.2.0 he9431aa_1 conda-forge 54kB
+ libexpat 2.6.4 h5ad3122_0 conda-forge 72kB
+ libstdcxx-ng 14.2.0 hf1166c9_1 conda-forge 54kB
+ libsqlite 3.47.2 h5eb1b54_0 conda-forge 1MB
+ libffi 3.4.2 h3557bc0_5 conda-forge 59kB
+ bzip2 1.0.8 h68df207_7 conda-forge 190kB
+ tk 8.6.13 h194ca79_0 conda-forge 3MB
+ readline 8.2 h8fc344f_1 conda-forge 294kB
+ libxcrypt 4.4.36 h31becfc_1 conda-forge 114kB
+ libuuid 2.38.1 hb4cce97_0 conda-forge 36kB
+ libnsl 2.0.1 h31becfc_0 conda-forge 35kB
+ zstd 1.5.6 h02f22dd_0 conda-forge 540kB
+ tzdata 2024b hc8b5060_0 conda-forge 122kB
+ python 3.11.11 h1683364_1_cpython conda-forge 15MB
+ wheel 0.45.1 pyhd8ed1ab_1 conda-forge 63kB
+ setuptools 75.8.0 pyhff2d567_0 conda-forge 776kB
+ pip 24.3.1 pyh8b19718_2 conda-forge 1MB
+ pycparser 2.22 pyh29332c3_1 conda-forge 110kB
+ hyperframe 6.0.1 pyhd8ed1ab_1 conda-forge 17kB
+ hpack 4.0.0 pyhd8ed1ab_1 conda-forge 29kB
+ pysocks 1.7.1 pyha55dd90_7 conda-forge 21kB
+ charset-normalizer 3.4.1 pyhd8ed1ab_0 conda-forge 47kB
+ idna 3.10 pyhd8ed1ab_1 conda-forge 50kB
+ certifi 2024.12.14 pyhd8ed1ab_0 conda-forge 162kB
+ h2 4.1.0 pyhd8ed1ab_1 conda-forge 52kB
+ brotli-python 1.1.0 py311h89d996e_2 conda-forge 357kB
+ cffi 1.17.1 py311h14e8bb7_0 conda-forge 319kB
+ zstandard 0.23.0 py311hd5293d8_1 conda-forge 392kB
+ urllib3 2.3.0 pyhd8ed1ab_0 conda-forge 100kB
+ requests 2.32.3 pyhd8ed1ab_1 conda-forge 59kB
Summary:
Install: 41 packages
Total download: 35MB
──────────────────────────────────────────────────────────────────────────────────
Confirm changes: [Y/n]
Transaction starting
Transaction finished
To activate this environment, use:
micromamba activate base
Or to execute a single command in this environment, use:
micromamba run -n base mycommand
Version: 1.5.12
Usage: mamba-package [OPTIONS] [SUBCOMMAND]
Options:
-h,--help Print this help message and exit
Subcommands:
extract
compress
transmute
running test pipeline for subpackage py3.10-libmambapy
building test workspace in: '/tmp/melange-guest-663952497-py3.10-libmambapy' with apko
2025/01/13 19:43:33 [DEBUG] GET https://apk.cgr.dev/wolfi-presubmit/83c26a2e06f1e4baba9f3c63956738e9f96d226c/apk-configuration
2025/01/13 19:43:34 [DEBUG] GET https://packages.wolfi.dev/os/apk-configuration
setting apk repositories: [https://apk.cgr.dev/wolfi-presubmit/83c26a2e06f1e4baba9f3c63956738e9f96d226c https://packages.wolfi.dev/os]
image configuration:
contents:
build repositories: []
runtime repositories: []
keyring: []
packages: [py3.10-libmambapy wolfi-base]
installing ca-certificates-bundle (20241121-r1)
installing wolfi-baselayout (20230201-r15)
installing glibc (2.40-r3)
installing libgcc (14.2.0-r7)
installing ld-linux (2.40-r3)
installing glibc-locale-posix (2.40-r3)
installing reproc (14.2.5-r2)
installing libstdc++ (14.2.0-r7)
installing reproc++ (14.2.5-r2)
installing yaml-cpp (0.8.0-r4)
installing libbz2-1 (1.0.8-r9)
installing fmt (11.1.2-r0)
installing zlib (1.3.1-r4)
installing libsolv (0.7.31-r0)
installing libzstd1 (1.5.6-r5)
installing libexpat1 (2.6.4-r0)
installing liblz4-1 (1.10.0-r2)
installing libattr1 (2.5.2-r4)
installing libacl1 (2.3.2-r4)
installing xz (5.6.3-r2)
installing libcrypto3 (3.4.0-r5)
installing libarchive (3.7.7-r1)
installing libssl3 (3.4.0-r5)
installing libunistring (1.3-r1)
installing libidn2 (2.3.7-r3)
installing libpsl (0.21.5-r4)
installing libbrotlicommon1 (1.1.0-r4)
installing libbrotlidec1 (1.1.0-r4)
installing krb5-conf (1.0-r3)
installing libverto (0.3.2-r4)
installing keyutils-libs (1.6.3-r5)
installing libcom_err (1.47.2-r0)
installing krb5-libs (1.21.3-r2)
installing ncurses-terminfo-base (6.5_p20241228-r0)
installing ncurses (6.5_p20241228-r0)
installing readline (8.2.13-r1)
installing sqlite-libs (3.47.2-r0)
installing libxcrypt (4.4.37-r0)
installing libcrypt1 (2.40-r3)
installing heimdal-libs (7.8.0-r7)
installing gdbm (1.24-r1)
installing cyrus-sasl (2.1.28-r5)
installing libevent (2.1.12-r6)
installing libldap (2.6.9-r0)
installing libnghttp2-14 (1.64.0-r1)
installing libcurl-openssl4 (8.11.1-r0)
installing libmamba (2025.01.02-r0)
installing mpdecimal (4.0.0-r3)
installing py3-pip-wheel (24.3.1-r1)
installing libffi (3.4.6-r5)
installing py3-setuptools-wheel (75.8.0-r0)
installing python-3.10-base (3.10.16-r0)
installing py3.10-libmambapy (2025.01.02-r0)
installing wolfi-keys (1-r8)
installing apk-tools (2.14.4-r1)
installing busybox (1.37.0-r0)
installing wolfi-base (1-r6)
built image layer tarball as /tmp/apko-temp-89367705/apko-aarch64.tar.gz
using /tmp/apko-temp-89367705/apko-aarch64.tar.gz for image layer
OCI layer digest: sha256:e9b3758b3804886f02d70f5ad4ac88e966c8b2539a6566c5518d1db20a7eb252
OCI layer diffID: sha256:dfd7ed3f524c0350d5400e67eeb72b2a590377556c7a9ef309a45598e6038eee
saving OCI image locally: apko.local/cache:4a580c296c4988196b5beaa0d7711d6ac7b0b26e92f28ffc2ef47401c4f60c8b
skipping local domain tagging apko.local/cache:4a580c296c4988196b5beaa0d7711d6ac7b0b26e92f28ffc2ef47401c4f60c8b as index.docker.io/library/melange:latest
ImgRef = apko.local/cache:4a580c296c4988196b5beaa0d7711d6ac7b0b26e92f28ffc2ef47401c4f60c8b
time="2025-01-13T19:43:36.877046270Z" level=info msg="connecting to shim dc6571867c7b97de5de065df2f4e43755aeb2e647d48d73f34bd409388af4ff7" address="unix:///run/containerd/s/60f2471762b97ebea0b3f935509d619ad96fb1899c4f45a9df7f1269e25f6633" namespace=moby protocol=ttrpc version=3
running step "python/import"
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/usr/lib/python3.10/site-packages/libmambapy/__init__.py", line 7, in <module>
raise e
File "/usr/lib/python3.10/site-packages/libmambapy/__init__.py", line 4, in <module>
from libmambapy.bindings import * # noqa: F401,F403
ModuleNotFoundError: No module named 'libmambapy.bindings'
python3.10 -c "import libmambapy": FAIL
time="2025-01-13T19:43:37.220956491Z" level=info msg="shim disconnected" id=dc6571867c7b97de5de065df2f4e43755aeb2e647d48d73f34bd409388af4ff7 namespace=moby
time="2025-01-13T19:43:37.221016811Z" level=warning msg="cleaning up after shim disconnected" id=dc6571867c7b97de5de065df2f4e43755aeb2e647d48d73f34bd409388af4ff7 namespace=moby
time="2025-01-13T19:43:37.221053971Z" level=info msg="cleaning up dead shim" namespace=moby
time="2025-01-13T19:43:37.221083371Z" level=info msg="ignoring event" container=dc6571867c7b97de5de065df2f4e43755aeb2e647d48d73f34bd409388af4ff7 module=libcontainerd namespace=moby topic=/tasks/delete type="*events.TaskDelete"
pod dc6571867c7b97de5de065df2f4e43755aeb2e647d48d73f34bd409388af4ff7 terminated
time="2025-01-13T19:43:37.367985500Z" level=info msg="shim disconnected" id=6e5cba87a990b61b46c5c188a9209cabcbbc4c385a642071c5e37a512015bfec namespace=moby
time="2025-01-13T19:43:37.368025820Z" level=warning msg="cleaning up after shim disconnected" id=6e5cba87a990b61b46c5c188a9209cabcbbc4c385a642071c5e37a512015bfec namespace=moby
time="2025-01-13T19:43:37.368055820Z" level=info msg="cleaning up dead shim" namespace=moby
time="2025-01-13T19:43:37.368169540Z" level=info msg="ignoring event" container=6e5cba87a990b61b46c5c188a9209cabcbbc4c385a642071c5e37a512015bfec module=libcontainerd namespace=moby topic=/tasks/delete type="*events.TaskDelete"
pod 6e5cba87a990b61b46c5c188a9209cabcbbc4c385a642071c5e37a512015bfec terminated
ERROR: failed to test package. the test environment has been preserved:
workspace dir: /tmp/melange-workspace-1293033714
guest dir: /tmp/melange-guest-663952497
failed to test package: unable to run pipeline: unable to run pipeline: unable to run pipeline: task exited with code 1
Indexes
https://apk.cgr.dev/wolfi-presubmit/83c26a2e06f1e4baba9f3c63956738e9f96d226c
Packages
- ✅ libmamba (success | 3m45s | x86_64 logs | aarch64 logs)
- aarch64/libmamba-2025.01.02-r0.apk
- aarch64/libmamba-dev-2025.01.02-r0.apk
- aarch64/mamba-package-2025.01.02-r0.apk
- aarch64/micromamba-2025.01.02-r0.apk
- aarch64/py3-supported-libmambapy-2025.01.02-r0.apk
- aarch64/py3.10-libmambapy-2025.01.02-r0.apk
- aarch64/py3.11-libmambapy-2025.01.02-r0.apk
- aarch64/py3.12-libmambapy-2025.01.02-r0.apk
- aarch64/py3.13-libmambapy-2025.01.02-r0.apk
- x86_64/libmamba-2025.01.02-r0.apk
- x86_64/libmamba-dev-2025.01.02-r0.apk
- x86_64/mamba-package-2025.01.02-r0.apk
- x86_64/micromamba-2025.01.02-r0.apk
- x86_64/py3-supported-libmambapy-2025.01.02-r0.apk
- x86_64/py3.10-libmambapy-2025.01.02-r0.apk
- x86_64/py3.11-libmambapy-2025.01.02-r0.apk
- x86_64/py3.12-libmambapy-2025.01.02-r0.apk
- x86_64/py3.13-libmambapy-2025.01.02-r0.apk
Tests
- ❌ libmamba (test error | 32s | x86_64 logs | aarch64 logs)
More Observability
Command
cg build log \
--build-id d69eb3cc-51bd-4bcb-94eb-f7df3e9d2253 \
--project prod-wolfi-os \
--cluster elastic-pre-a \
--namespace pre-wolfi \
--start 2025-01-13T19:37:52Z \
--end 2025-01-13T19:53:44Z \
--attrs pkg,arch
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