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[Bug]: MongoDBReader连接复制集类型mongo报错连接超时 #1036

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TongWenbin opened this issue May 22, 2024 · 2 comments
Closed

[Bug]: MongoDBReader连接复制集类型mongo报错连接超时 #1036

TongWenbin opened this issue May 22, 2024 · 2 comments
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@wgzhao
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bug Something isn't working

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@TongWenbin
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What happened?

连接分片集群模式的mongodb时正常，但连接复制集模式的mongodb时报超时。
网络没有问题，
集群自身没有问题，
可以通过Navicat等工具正常连接使用，也可以用java代码正常使用，目前只在DataX中不可用

Version

4.0.2

OS Type

Linux (Default)

Java JDK Version

Oracle JDK 1.8.0

Relevant log output

[INFO] 2024-05-16 20:31:44.252 [TaskLogInfo- - [taskAppId=TASK-8797420463360_8-4164148-18272042]-getOutputLogService]  -  -> �[36m2024-05-16 20:31:43.266�[0;39m �[32m[        main]�[0;39m �[34mINFO �[0;39m �[35mPerfTrace           �[0;39m - PerfTrace traceId=job_-1, isEnable=false, priority=0
	�[36m2024-05-16 20:31:43.267�[0;39m �[32m[        main]�[0;39m �[34mINFO �[0;39m �[35mJobContainer        �[0;39m - Addax jobContainer starts job.
	�[36m2024-05-16 20:31:43.268�[0;39m �[32m[        main]�[0;39m �[34mINFO �[0;39m �[35mJobContainer        �[0;39m - Set jobId = 0
	�[36m2024-05-16 20:31:43.419�[0;39m �[32m[       job-0]�[0;39m �[34mINFO �[0;39m �[35mcluster             �[0;39m - Cluster created with settings {hosts=[7.215.190.37:8635], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
	�[36m2024-05-16 20:31:43.419�[0;39m �[32m[       job-0]�[0;39m �[34mINFO �[0;39m �[35mcluster             �[0;39m - Adding discovered server 7.215.190.37:8635 to client view of cluster
	�[36m2024-05-16 20:31:43.599�[0;39m �[32m[cluster-ClusterId{value='6645fcaf9896617c63d5d90c', description='null'}-7.215.190.37:8635]�[0;39m �[34mINFO �[0;39m �[35mconnection          �[0;39m - Opened connection [connectionId{localValue:1, serverValue:9921995}] to 7.215.190.37:8635
	�[36m2024-05-16 20:31:43.637�[0;39m �[32m[cluster-ClusterId{value='6645fcaf9896617c63d5d90c', description='null'}-7.215.190.37:8635]�[0;39m �[34mINFO �[0;39m �[35mcluster             �[0;39m - Monitor thread successfully connected to server with description ServerDescription{address=7.215.190.37:8635, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[4, 2, 0]}, minWireVersion=0, maxWireVersion=8, maxDocumentSize=16777216, logicalSessionTimeoutMinutes=30, roundTripTimeNanos=34618649, setName='replica', canonicalAddress=192.168.21.82:8635, hosts=[192.168.20.154:8635, 192.168.21.82:8635, 192.168.32.56:8635, 192.168.38.178:8635], passives=[], arbiters=[], primary='192.168.21.82:8635', tagSet=TagSet{[]}, electionId=7fffffff0000000000000003, setVersion=108055, lastWriteDate=Thu May 16 20:31:43 CST 2024, lastUpdateTimeNanos=199484528738046}
	�[36m2024-05-16 20:31:43.638�[0;39m �[32m[cluster-ClusterId{value='6645fcaf9896617c63d5d90c', description='null'}-7.215.190.37:8635]�[0;39m �[34mINFO �[0;39m �[35mcluster             �[0;39m - Discovered cluster type of REPLICA_SET
	�[36m2024-05-16 20:31:43.639�[0;39m �[32m[cluster-ClusterId{value='6645fcaf9896617c63d5d90c', description='null'}-7.215.190.37:8635]�[0;39m �[34mINFO �[0;39m �[35mcluster             �[0;39m - Adding discovered server 192.168.20.154:8635 to client view of cluster
	�[36m2024-05-16 20:31:43.639�[0;39m �[32m[cluster-ClusterId{value='6645fcaf9896617c63d5d90c', description='null'}-7.215.190.37:8635]�[0;39m �[34mINFO �[0;39m �[35mcluster             �[0;39m - Adding discovered server 192.168.21.82:8635 to client view of cluster
	�[36m2024-05-16 20:31:43.640�[0;39m �[32m[cluster-ClusterId{value='6645fcaf9896617c63d5d90c', description='null'}-7.215.190.37:8635]�[0;39m �[34mINFO �[0;39m �[35mcluster             �[0;39m - Adding discovered server 192.168.32.56:8635 to client view of cluster
	�[36m2024-05-16 20:31:43.641�[0;39m �[32m[cluster-ClusterId{value='6645fcaf9896617c63d5d90c', description='null'}-7.215.190.37:8635]�[0;39m �[34mINFO �[0;39m �[35mcluster             �[0;39m - Adding discovered server 192.168.38.178:8635 to client view of cluster
	�[36m2024-05-16 20:31:43.642�[0;39m �[32m[cluster-ClusterId{value='6645fcaf9896617c63d5d90c', description='null'}-7.215.190.37:8635]�[0;39m �[34mINFO �[0;39m �[35mcluster             �[0;39m - Server 7.215.190.37:8635 is no longer a member of the replica set.  Removing from client view of cluster.
	�[36m2024-05-16 20:31:43.643�[0;39m �[32m[cluster-ClusterId{value='6645fcaf9896617c63d5d90c', description='null'}-7.215.190.37:8635]�[0;39m �[34mINFO �[0;39m �[35mcluster             �[0;39m - Canonical address 192.168.21.82:8635 does not match server address.  Removing 7.215.190.37:8635 from client view of cluster
	�[36m2024-05-16 20:31:44.084�[0;39m �[32m[       job-0]�[0;39m �[34mINFO �[0;39m �[35mJobContainer        �[0;39m - Addax Reader.Job [mongodbreader] do prepare work .
	�[36m2024-05-16 20:31:44.084�[0;39m �[32m[       job-0]�[0;39m �[34mINFO �[0;39m �[35mJobContainer        �[0;39m - Addax Writer.Job [hdfswriter] do prepare work .
	�[36m2024-05-16 20:31:44.220�[0;39m �[32m[       job-0]�[0;39m �[34mINFO �[0;39m �[35mJobContainer        �[0;39m - Job set Channel-Number to 1 channels.
	�[36m2024-05-16 20:31:44.239�[0;39m �[32m[       job-0]�[0;39m �[34mINFO �[0;39m �[35mcluster             �[0;39m - No server chosen by com.mongodb.client.internal.MongoClientDelegate$1@625e134e from cluster description ClusterDescription{type=REPLICA_SET, connectionMode=MULTIPLE, serverDescriptions=[ServerDescription{address=192.168.38.178:8635, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=192.168.21.82:8635, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=192.168.20.154:8635, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=192.168.32.56:8635, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out
[INFO] 2024-05-16 20:32:04.255 [TaskLogInfo- - [taskAppId=TASK-8797420463360_8-4164148-18272042]-getOutputLogService]  -  -> �[36m2024-05-16 20:32:03.650�[0;39m �[32m[cluster-ClusterId{value='6645fcaf9896617c63d5d90c', description='null'}-192.168.32.56:8635]�[0;39m �[34mINFO �[0;39m �[35mcluster             �[0;39m - Exception in monitor thread while connecting to server 192.168.32.56:8635
	com.mongodb.MongoSocketOpenException: Exception opening socket
		at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
		at com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:128)
		at com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
		at java.lang.Thread.run(Thread.java:748)
	Caused by: java.net.SocketTimeoutException: connect timed out
		at java.net.PlainSocketImpl.socketConnect(Native Method)
		at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
		at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
		at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
		at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
		at java.net.Socket.connect(Socket.java:607)
		at com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
		at com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
		at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
		... 3 common frames omitted
	�[36m2024-05-16 20:32:03.660�[0;39m �[32m[cluster-ClusterId{value='6645fcaf9896617c63d5d90c', description='null'}-192.168.20.154:8635]�[0;39m �[34mINFO �[0;39m �[35mcluster             �[0;39m - Exception in monitor thread while connecting to server 192.168.20.154:8635
	com.mongodb.MongoSocketOpenException: Exception opening socket
		at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
		at com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:128)
		at com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
		at java.lang.Thread.run(Thread.java:748)
	Caused by: java.net.SocketTimeoutException: connect timed out
		at java.net.PlainSocketImpl.socketConnect(Native Method)
		at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
		at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
		at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
		at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
		at java.net.Socket.connect(Socket.java:607)
		at com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
		at com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
		at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
		... 3 common frames omitted
	�[36m2024-05-16 20:32:03.661�[0;39m �[32m[cluster-ClusterId{value='6645fcaf9896617c63d5d90c', description='null'}-192.168.21.82:8635]�[0;39m �[34mINFO �[0;39m �[35mcluster             �[0;39m - Exception in monitor thread while connecting to server 192.168.21.82:8635
	com.mongodb.MongoSocketOpenException: Exception opening socket
		at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
		at com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:128)
		at com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
		at java.lang.Thread.run(Thread.java:748)
	Caused by: java.net.SocketTimeoutException: connect timed out
		at java.net.PlainSocketImpl.socketConnect(Native Method)
		at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
		at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
		at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
		at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
		at java.net.Socket.connect(Socket.java:607)
		at com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
		at com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
		at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
		... 3 common frames omitted
	�[36m2024-05-16 20:32:03.663�[0;39m �[32m[cluster-ClusterId{value='6645fcaf9896617c63d5d90c', description='null'}-192.168.38.178:8635]�[0;39m �[34mINFO �[0;39m �[35mcluster             �[0;39m - Exception in monitor thread while connecting to server 192.168.38.178:8635
	com.mongodb.MongoSocketOpenException: Exception opening socket
		at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
		at com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:128)
		at com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
		at java.lang.Thread.run(Thread.java:748)
	Caused by: java.net.SocketTimeoutException: connect timed out
		at java.net.PlainSocketImpl.socketConnect(Native Method)
		at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
		at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
		at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
		at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
		at java.net.Socket.connect(Socket.java:607)
		at com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
		at com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
		at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
		... 3 common frames omitted
[INFO] 2024-05-16 20:32:14.257 [TaskLogInfo- - [taskAppId=TASK-8797420463360_8-4164148-18272042]-getOutputLogService]  -  -> �[36m2024-05-16 20:32:14.244�[0;39m �[32m[       job-0]�[0;39m �[34mINFO �[0;39m �[35mStandAloneJobContainerCommunicator�[0;39m - Total 0 records, 0 bytes | Speed 0B/s, 0 records/s | Error 0 records, 0 bytes |  All Task WaitWriterTime 0.000s |  All Task WaitReaderTime 0.000s | Percentage 0.00%
	�[36m2024-05-16 20:32:14.246�[0;39m �[32m[       job-0]�[0;39m �[1;31mERROR�[0;39m �[35mEngine              �[0;39m - Code:[Framework-02], Description:[Addax 引擎运行过程出错，具体原因请参看Addax 运行结束时的错误诊断信息  .].  - Code:[Framework-02], Description:[Addax 引擎运行过程出错，具体原因请参看Addax 运行结束时的错误诊断信息  .].  - com.mongodb.MongoTimeoutException: Timed out after 30000 ms while waiting for a server that matches com.mongodb.client.internal.MongoClientDelegate$1@625e134e. Client view of cluster state is {type=REPLICA_SET, servers=[{address=192.168.38.178:8635, type=UNKNOWN, state=CONNECTING, exception={com.mongodb.MongoSocketOpenException: Exception opening socket}, caused by {java.net.SocketTimeoutException: connect timed out}}, {address=192.168.21.82:8635, type=UNKNOWN, state=CONNECTING, exception={com.mongodb.MongoSocketOpenException: Exception opening socket}, caused by {java.net.SocketTimeoutException: connect timed out}}, {address=192.168.20.154:8635, type=UNKNOWN, state=CONNECTING, exception={com.mongodb.MongoSocketOpenException: Exception opening socket}, caused by {java.net.SocketTimeoutException: connect timed out}}, {address=192.168.32.56:8635, type=UNKNOWN, state=CONNECTING, exception={com.mongodb.MongoSocketOpenException: Exception opening socket}, caused by {java.net.SocketTimeoutException: connect timed out}}]
		at com.mongodb.internal.connection.BaseCluster.createTimeoutException(BaseCluster.java:408)
		at com.mongodb.internal.connection.BaseCluster.selectServer(BaseCluster.java:123)
		at com.mongodb.internal.connection.AbstractMultiServerCluster.selectServer(AbstractMultiServerCluster.java:54)
		at com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:157)
		at com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:105)
		at com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:287)
		at com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:191)
		at com.mongodb.client.internal.FindIterableImpl.first(FindIterableImpl.java:211)
		at com.wgzhao.addax.plugin.reader.mongodbreader.util.CollectionSplitUtil.isPrimaryIdObjectId(CollectionSplitUtil.java:79)
		at com.wgzhao.addax.plugin.reader.mongodbreader.util.CollectionSplitUtil.doSplit(CollectionSplitUtil.java:62)
		at com.wgzhao.addax.plugin.reader.mongodbreader.MongoDBReader$Job.split(MongoDBReader.java:74)
		at com.wgzhao.addax.core.job.JobContainer.doReaderSplit(JobContainer.java:739)
		at com.wgzhao.addax.core.job.JobContainer.split(JobContainer.java:420)
		at com.wgzhao.addax.core.job.JobContainer.start(JobContainer.java:136)
		at com.wgzhao.addax.core.Engine.start(Engine.java:79)
		at com.wgzhao.addax.core.Engine.entry(Engine.java:137)
		at com.wgzhao.addax.core.Engine.main(Engine.java:175)
	 - com.mongodb.MongoTimeoutException: Timed out after 30000 ms while waiting for a server that matches com.mongodb.client.internal.MongoClientDelegate$1@625e134e. Client view of cluster state is {type=REPLICA_SET, servers=[{address=192.168.38.178:8635, type=UNKNOWN, state=CONNECTING, exception={com.mongodb.MongoSocketOpenException: Exception opening socket}, caused by {java.net.SocketTimeoutException: connect timed out}}, {address=192.168.21.82:8635, type=UNKNOWN, state=CONNECTING, exception={com.mongodb.MongoSocketOpenException: Exception opening socket}, caused by {java.net.SocketTimeoutException: connect timed out}}, {address=192.168.20.154:8635, type=UNKNOWN, state=CONNECTING, exception={com.mongodb.MongoSocketOpenException: Exception opening socket}, caused by {java.net.SocketTimeoutException: connect timed out}}, {address=192.168.32.56:8635, type=UNKNOWN, state=CONNECTING, exception={com.mongodb.MongoSocketOpenException: Exception opening socket}, caused by {java.net.SocketTimeoutException: connect timed out}}]
		at com.mongodb.internal.connection.BaseCluster.createTimeoutException(BaseCluster.java:408)
		at com.mongodb.internal.connection.BaseCluster.selectServer(BaseCluster.java:123)
		at com.mongodb.internal.connection.AbstractMultiServerCluster.selectServer(AbstractMultiServerCluster.java:54)
		at com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:157)
		at com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:105)
		at com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:287)
		at com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:191)
		at com.mongodb.client.internal.FindIterableImpl.first(FindIterableImpl.java:211)
		at com.wgzhao.addax.plugin.reader.mongodbreader.util.CollectionSplitUtil.isPrimaryIdObjectId(CollectionSplitUtil.java:79)
		at com.wgzhao.addax.plugin.reader.mongodbreader.util.CollectionSplitUtil.doSplit(CollectionSplitUtil.java:62)
		at com.wgzhao.addax.plugin.reader.mongodbreader.MongoDBReader$Job.split(MongoDBReader.java:74)
		at com.wgzhao.addax.core.job.JobContainer.doReaderSplit(JobContainer.java:739)
		at com.wgzhao.addax.core.job.JobContainer.split(JobContainer.java:420)
		at com.wgzhao.addax.core.job.JobContainer.start(JobContainer.java:136)
		at com.wgzhao.addax.core.Engine.start(Engine.java:79)
		at com.wgzhao.addax.core.Engine.entry(Engine.java:137)
		at com.wgzhao.addax.core.Engine.main(Engine.java:175)
	
[INFO] 2024-05-16 20:32:14.577 [TaskLogInfo- - [taskAppId=TASK-8797420463360_8-4164148-18272042]]  - process has exited, execute path:/tmp/dolphinscheduler/exec/process/8243737687296/8797420463360_8/4164148/18272042, processId:103993 ,exitStatusCode:1 ,processWaitForStatus:true ,processExitValue:1
[INFO] 2024-05-16 20:32:15.258 [TaskLogInfo- - [taskAppId=TASK-8797420463360_8-4164148-18272042]-getOutputLogService]  -  -> ==================== DEPRECATED WARNING ========================
	addax.py is deprecated, It's going to be removed in future release.
	As a replacement, you can use addax.sh to run job
	==================== DEPRECATED WARNING ========================
@TongWenbin TongWenbin added the bug Something isn't working label May 22, 2024
@TongWenbin
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TongWenbin commented May 22, 2024 •
edited by wgzhao
Loading

DataX配置如下，部分信息已去掉

{
    "job": {
        "setting": {
            "speed": {
                "channel": 1
            }
        },
        "content": [{
            "reader": {
                "name": "mongodbreader",
                "parameter": {
                    "address": ["7.215.190.37:8635"],
                    "userName": "XXXXXXXXXX",
                    "userPassword": "XXXXXXXXXXXXX",
                    "dbName": "XXXXXXXXXXXXX",
                    "collectionName": "XXXXXXXXXXXX",
                    "column": [{
                        "name": "_id",
                        "type": "string"
                    },{
						"name": "DETAIL.name",
                        "type": "document.string"
                        
                    },{
                        "name": "DETAIL.spaceId",
                        "type": "document.string"
                    }
					]
                }
            },
          "writer": {
                "name": "hdfswriter"
               XXXXXXXXXXXXXXXXXXXXXX
                }
            },
			"transformer": [
			{
            "name": "dx_groovy",
		    "parameter": 
					{
                 "code": 
                 "for(int i=0;i<record.getColumnNumber();i++){
							if(record.getColumn(i).getByteSize()!=0){
								Column column = record.getColumn(i); 
								def str = column.asString(); 
								def newStr=null; 
								newStr=str.replaceAll(\"[\\r\\n\\t]\",\"\"); 
								record.setColumn(i, new StringColumn(newStr)); 
							};
						 };
						 return record;",
		         "extraPackage":[]
                    }
            }
	      ]
        }]
    }
}

@wgzhao
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wgzhao commented May 23, 2024

下载
mongodbreader-4.1.5-SNAPSHOT.zip，将后缀 .zip 改成 .jar，然后替换 $ADDAX_HOME/plugin/reader/mongodbreader/mongodbreader-<version>.jar 文件后，再试试看是否能解决这个问题。

目前在我本地可以复现你的问题，并已解决，但针对非集群的情况还要更多的测试，确保不会影响其他部署模式的 MongoDB 集群。

wgzhao added a commit that referenced this issue May 23, 2024
@wgzhao
try to fix mongo reader
826a889 
when deploy mongodb cluster as replica set, it reports timeout,
refs #1036
@wgzhao wgzhao mentioned this issue May 24, 2024
Merged
wgzhao added a commit that referenced this issue May 24, 2024
@wgzhao
[bugfix][reader][mongodb] read timeout with replica cluster (#1037)
a13cfa5 
when deploy mongodb cluster as replica set, it reports timeout, refs #1036
@wgzhao wgzhao closed this as completed May 27, 2024
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